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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 1-10 of 299 total displayed.
- Methods Online
Prioritization of candidate cancer genes—an aid to oncogenomic studies
- Simon J. Furney, Borja Calvo, Pedro Larrañaga, Jose A. Lozano, and Nuria Lopez-Bigas
Nucleic Acids Res. 2008; 36: e115.
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- Computational Biology
The whole alignment and nothing but the alignment: the problem of spurious alignment flanks
- Martin C. Frith, Yonil Park, Sergey L. Sheetlin, and John L. Spouge
Nucleic Acids Res. 2008; 36: 5863-5871.
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- Computational Biology
KnotInFrame: prediction of –1 ribosomal frameshift events
- Corinna Theis, Jens Reeder, and Robert Giegerich
Nucleic Acids Res. 2008; 36: 6013-6020.
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- Methods Online
Functional studies on transfected cell microarray analysed by linear regression modelling
- Christina Sæten Fjeldbo, Kristine Misund, Clara-Cecilie Günther, Mette Langaas, Tonje Strømmen Steigedal, Liv Thommesen, Astrid Lægreid, and Torunn Bruland
Nucleic Acids Res. 2008; 36: e97.
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- Methods Online
End-joining long nucleic acid polymers
- M. van den Hout, S. Hage, C. Dekker, and N. H. Dekker
Nucleic Acids Res. 2008; 36: e104.
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- Methods Online
A protein–DNA docking benchmark
- Marc van Dijk and Alexandre M. J. J. Bonvin
Nucleic Acids Res. 2008; 36: e88.
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- Methods Online
Multiple segmental and selective isotope labeling of large RNA for NMR structural studies
- Frank H. T. Nelissen, Adriaan J. van Gammeren, Marco Tessari, Frederic C. Girard, Hans A. Heus, and Sybren S. Wijmenga
Nucleic Acids Res. 2008; 36: e89.
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- Computational Biology
MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
- Jianfei Hu, Haiyan Hu, and Xiaoman Li
Nucleic Acids Res. 2008; 36: 4488-4497.
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- Computational Biology
Hit selection with false discovery rate control in genome-scale RNAi screens
- Xiaohua Douglas Zhang, Pei Fen Kuan, Marc Ferrer, Xiaohua Shu, Yingxue C. Liu, Adam T. Gates, Priya Kunapuli, Erica M. Stec, Min Xu, Shane D. Marine, Daniel J. Holder, Berta Strulovici, Joseph F. Heyse, and Amy S. Espeseth
Nucleic Acids Res. 2008; 36: 4667-4679.
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- Methods Online
Improved assay-dependent searching of nucleic acid sequence databases
- Jason D. Gans and Murray Wolinsky
Nucleic Acids Res. 2008; 36: e74.
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