Nucleic Acids Research, Vol 27, Issue 1 355-357, Copyright © 1999 by Oxford University Press
T Kawabata, M Ota and K Nishikawa
Currently the protein mutant database (PMD) contains over 81 000 mutants,
including artificial as well as natural mutants of various proteins
extracted from about 10 000 articles. We recently developed a powerful
viewing and retrieving system (http://pmd.ddbj.nig.ac.jp), which is
integrated with the sequence and tertiary structure databases. The system
has the following features: (i) mutated sequences are displayed after being
automatically generated from the information described in the entry
together with the sequence data of wild-type proteins integrated. This is a
convenient feature because it allows one to see the position of altered
amino acids (shown in a different color) in the entire sequence of a
wild-type protein; (ii) for those proteins whose 3D structures have been
experimentally determined, a 3D structure is displayed to show mutation
sites in a different color; (iii) a sequence homology search against PMD
can be carried out with any query sequence; (iv) a summary of mutations of
homologous sequences can be displayed, which shows all the mutations at a
certain site of a protein, recorded throughout the PMD.
ARTICLES
The Protein Mutant Database
Center for Information Biology, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan. takawaba@lab.nig.ac.jp
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