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Nucleic Acids Research, 2000, Vol. 28, No. 1 304-305
© 2000 Oxford University Press

The ENZYME database in 2000

Amos Bairoch*

Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland

The ENZYME database is a repository of information related to the nomenclature of enzymes. In recent years it has became an indispensable resource for the development of metabolic databases. The current version contains information on 3705 enzymes. It is available through the ExPASy WWW server (http://www. expasy.ch/enzyme/ ).

* Tel: +41 22 702 5477; Fax: +41 22 702 5502; Email: amos.bairoch@medecine.unige.ch


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[Abstract] [Full Text] [PDF]

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