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Nucleic Acids Research, 2003, Vol. 31, No. 1 156-158
© 2003 Oxford University Press

CATMA: a complete Arabidopsis GST database

Mark L. Crowe*,1,2, Carine Serizet1,2, Vincent Thareau1,3, Sébastien Aubourg3, Pierre Rouzé1, Pierre Hilson2,3, Jim Beynon4, Peter Weisbeek5, Paul van Hummelen6, Philippe Reymond7, Javier Paz-Ares8, Wilfried Nietfeld9 and Martin Trick1

The John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, UK 1 Laboratoire associé de l'INRA (France), University Ghent, K. L. Ledeganckstraat, B-9000, Gent, Belgium 2 Department of Plant Systems Biology, VIB, University Ghent, K. L. Ledeganckstraat, B-9000, Gent, Belgium 3 Unité de Recherche en Génomique Végétale (URGV) INRA-CNRS, 2 rue Gaston Crémieux, 91057 Evry Cedex, France 4 Department of Plant Biotechnology, Horticultural Research International, Wellesbourne, Warwick CV35 9EF, UK 5 Department of Molecular Genetics, University of Utrecht, Padualaan 8, 3584CH Utrecht, The Netherlands 6 MicroArray Facility, Flanders Interuniversity Institute of Biotechnology (VIB), Herestraat 49, 3000 Leuven, Belgium 7 Gene Expression Laboratory, Institute of Ecology, University of Lausanne, 1015 Lausanne, Switzerland 8 Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia, Campus de Cantoblanco, 28049-Madrid, Spain 9 Max-Planck-Institute for Molecular Genetics, Department Lehrach-Vertebrate Genomics, Ihnestrasse 73, D-14195 Berlin-Dahlem, Germany

*To whom correspondence should be addressed. Email: mark.crowe{at}bbsrc.ac.uk

ABSTRACT

The Complete Arabidopsis Transcriptome Micro Array (CATMA) database contains gene sequence tag (GST) and gene model sequences for over 70% of the predicted genes in the Arabidopsis thaliana genome as well as primer sequences for GST amplification and a wide range of supplementary information. All CATMA GST sequences are specific to the gene for which they were designed, and all gene models were predicted from a complete reannotation of the genome using uniform parameters. The database is searchable by sequence name, sequence homology or direct SQL query, and is available through the CATMA website at http://www.catma.org/.


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