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Nucleic Acids Research, 2003, Vol. 31, No. 13 3483-3486
© 2003 Oxford University Press

ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis

Sheng Zhong1, Cheng Li*,1,3 and Wing Hung Wong1,2

1 Department of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA 02115, USA 2 Department of Statistics, Harvard University, Science Center, 1 Oxford Street, Cambridge, MA 02138, USA 3 Department of Biostatistical Science, Dana-Farber Cancer Institute, 44 Binney Street, Boston, MA 02115, USA

*To whom correspondence should be addressed. Tel: +1 617 632 3498; Fax: +1 617 632 5444; Email: cli{at}hsph.harvard.edu
Correspondence may also be addressed to Wing Hung Wong. Tel: +1 6174324912; Fax: +1 6177391781; Email: wwong{at}stat.harvard.edu

To date, assembling comprehensive annotation information for all probe sets of any Affymetrix microarrays remains a time-consuming, error-prone and challenging task. ChipInfo is designed for retrieving annotation information from online databases such as NetAffx and Gene Ontology and organizing such information into easily interpretable tabular format outputs. As companion software to dChip and GoSurfer, ChipInfo enables users to independently update the information resource files of these software packages. It also has functions for computing related summary statistics of probe sets and Gene Ontology terms. ChipInfo is available at http://biosun1.harvard.edu/complab/chipinfo/.


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