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Nucleic Acids Research, 2004, Vol. 32, Database issue D423-D426
© 2004 Oxford University Press

Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes

Todd Wylie*,1, John C. Martin1, Michael Dante1, Makedonka Dautova Mitreva1, Sandra W. Clifton1, Asif Chinwalla1, Robert H. Waterston1,2, Richard K. Wilson1 and James P. McCarter1,3

1 The Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA, 2 Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, Seattle, WA 98195, USA and 3 Divergence Inc., 893 North Warson Road, St Louis, MO 63141, USA

*To whom correspondence should be addressed. Tel: +1 314 286 1114; Fax: +1 314 286 1810; Email: twylie{at}watson.wustl.edu

Nematode.net (www.nematode.net) is a web- accessible resource for investigating gene sequences from nematode genomes. The database is an outgrowth of the parasitic nematode EST project at Washington University’s Genome Sequencing Center (GSC), St Louis. A sister project at the University of Edinburgh and the Sanger Institute is also underway. More than 295 000 ESTs have been generated from >30 nematodes other than Caenorhabditis elegans including key parasites of humans, animals and plants. Nematode.net currently provides NemaGene EST cluster consensus sequence, enhanced online BLAST search tools, functional classifications of cluster sequences and comprehensive information concerning the ongoing generation of nematode genome data. The long-term goal of nematode.net is to provide the scientific community with the highest quality sequence information and tools for studying these diverse species.


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