Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (128K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Craigon, D. J.
Right arrow Articles by May, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Craigon, D. J.
Right arrow Articles by May, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2004, Vol. 32, Database issue D575-D577
© 2004 Oxford University Press

NASCArrays: a repository for microarray data generated by NASC’s transcriptomics service

David J. Craigon, Nick James, John Okyere, Janet Higgins, Joan Jotham and Sean May*

The Nottingham Arabidopsis Stock Centre, Division of Plant Sciences, University of Nottingham, Sutton Bonington LE12 5RD, UK

*To whom correspondence should be addressed. Tel: +44 115 9513237; Fax: +44 115 9513297; Email: sean{at}arabidopsis.info

NASC operates an Affymetrix ‘GeneChip’ (microarray) service for the Arabidopsis thaliana community. All data produced by the service are publicly available through our microarray data base ‘NASCArrays’ published at http://affymetrix. arabidopsis.info. The data are accessible through text searching and a series of data mining tools. All data are annotated with sample preparation details, and the original Affymetrix data are available for download. The database aims to be MIAME supportive and provide a coordinated resource for re searchers interested in the transcriptome of Arabidopsis. Using this database, data produced will be shared with other databases worldwide.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Plant Physiol.Home page
V. Srinivasasainagendra, G. P. Page, T. Mehta, I. Coulibaly, and A. E. Loraine
CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis
Plant Physiology, July 1, 2008; 147(3): 1004 - 1016.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
N. Tsesmetzis, M. Couchman, J. Higgins, A. Smith, J. H. Doonan, G. J. Seifert, E. E. Schmidt, I. Vastrik, E. Birney, G. Wu, et al.
Arabidopsis Reactome: A Foundation Knowledgebase for Plant Systems Biology
PLANT CELL, June 1, 2008; 20(6): 1426 - 1436.
[Full Text] [PDF]

Home page
 Plant Physiol.Home page
Z. Bieniawska, C. Espinoza, A. Schlereth, R. Sulpice, D. K. Hincha, and M. A. Hannah
Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome
Plant Physiology, May 1, 2008; 147(1): 263 - 279.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
D. Kerk, G. Templeton, and G. B.G. Moorhead
Evolutionary Radiation Pattern of Novel Protein Phosphatases Revealed by Analysis of Protein Data from the Completely Sequenced Genomes of Humans, Green Algae, and Higher Plants
Plant Physiology, February 1, 2008; 146(2): 351 - 367.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. L. Gifford, A. Dean, R. A. Gutierrez, G. M. Coruzzi, and K. D. Birnbaum
Cell-specific nitrogen responses mediate developmental plasticity
PNAS, January 15, 2008; 105(2): 803 - 808.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
I. Takigawa and H. Mamitsuka
Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis
Bioinformatics, January 15, 2008; 24(2): 250 - 257.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. K. Wall, J. Leebens-Mack, K. F. Muller, D. Field, N. S. Altman, and C. W. dePamphilis
PlantTribes: a gene and gene family resource for comparative genomics in plants
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D970 - D976.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
R. Wen, J. A. Torres-Acosta, L. Pastushok, X. Lai, L. Pelzer, H. Wang, and W. Xiao
Arabidopsis UEV1D Promotes Lysine-63-Linked Polyubiquitination and Is Involved in DNA Damage Response
PLANT CELL, January 1, 2008; 20(1): 213 - 227.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
S. Ma, Q. Gong, and H. J. Bohnert
An Arabidopsis gene network based on the graphical Gaussian model
Genome Res., November 1, 2007; 17(11): 1614 - 1625.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
R. Albert
Network Inference, Analysis, and Modeling in Systems Biology
PLANT CELL, November 1, 2007; 19(11): 3327 - 3338.
[Full Text] [PDF]

Home page
 J Exp BotHome page
S. U. Andersen, R. G. Algreen-Petersen, M. Hoedl, A. Jurkiewicz, C. Cvitanich, U. Braunschweig, L. Schauser, S.-A. Oh, D. Twell, and E. O. Jensen
The conserved cysteine-rich domain of a tesmin/TSO1-like protein binds zinc in vitro and TSO1 is required for both male and female fertility in Arabidopsis thaliana
J. Exp. Bot., October 1, 2007; 58(13): 3657 - 3670.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
L. Li, H. Ilarslan, M. G. James, A. M. Myers, and E. S. Wurtele
Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana
J. Exp. Bot., September 20, 2007; (2007) erm180v1.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
D. Gonzalez, A. J. Bowen, T. S. Carroll, and R. S. Conlan
The Transcription Corepressor LEUNIG Interacts with the Histone Deacetylase HDA19 and Mediator Components MED14 (SWP) and CDK8 (HEN3) To Repress Transcription
Mol. Cell. Biol., August 1, 2007; 27(15): 5306 - 5315.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
A. Huffaker and C. A. Ryan
Endogenous peptide defense signals in Arabidopsis differentially amplify signaling for the innate immune response
PNAS, June 19, 2007; 104(25): 10732 - 10736.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
K. Nobuta, R.A. Okrent, M. Stoutemyer, N. Rodibaugh, L. Kempema, M.C. Wildermuth, and R.W. Innes
The GH3 Acyl Adenylase Family Member PBS3 Regulates Salicylic Acid-Dependent Defense Responses in Arabidopsis
Plant Physiology, June 1, 2007; 144(2): 1144 - 1156.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
K. Yonekura-Sakakibara, T. Tohge, R. Niida, and K. Saito
Identification of a Flavonol 7-O-Rhamnosyltransferase Gene Determining Flavonoid Pattern in Arabidopsis by Transcriptome Coexpression Analysis and Reverse Genetics
J. Biol. Chem., May 18, 2007; 282(20): 14932 - 14941.
[Abstract] [Full Text] [PDF]

Home page
 Plant Cell PhysiolHome page
K. Aoki, Y. Ogata, and D. Shibata
Approaches for Extracting Practical Information from Gene Co-expression Networks in Plant Biology
Plant Cell Physiol., March 1, 2007; 48(3): 381 - 390.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
M. A. Strawn, S. K. Marr, K. Inoue, N. Inada, C. Zubieta, and M. C. Wildermuth
Arabidopsis Isochorismate Synthase Functional in Pathogen-induced Salicylate Biosynthesis Exhibits Properties Consistent with a Role in Diverse Stress Responses
J. Biol. Chem., February 23, 2007; 282(8): 5919 - 5933.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
K. Ilic, E. A. Kellogg, P. Jaiswal, F. Zapata, P. F. Stevens, L. P. Vincent, S. Avraham, L. Reiser, A. Pujar, M. M. Sachs, et al.
The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant
Plant Physiology, February 1, 2007; 143(2): 587 - 599.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
M. W.B. Spencer, S. A. Casson, and K. Lindsey
Transcriptional Profiling of the Arabidopsis Embryo
Plant Physiology, February 1, 2007; 143(2): 924 - 940.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
I. W. Manfield, P. F. Devlin, C.-H. Jen, D. R. Westhead, and P. M. Gilmartin
Conservation, Convergence, and Divergence of Light-Responsive, Circadian-Regulated, and Tissue-Specific Expression Patterns during Evolution of the Arabidopsis GATA Gene Family
Plant Physiology, February 1, 2007; 143(2): 941 - 958.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Bulow, M. Schindler, and R. Hehl
PathoPlant(R): a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D841 - D845.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
T. Obayashi, K. Kinoshita, K. Nakai, M. Shibaoka, S. Hayashi, M. Saeki, D. Shibata, K. Saito, and H. Ohta
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D863 - D869.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Galuschka, M. Schindler, L. Bulow, and R. Hehl
AthaMap web tools for the analysis and identification of co-regulated genes
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D857 - D862.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
G. Haberer, M. T. Mader, P. Kosarev, M. Spannagl, L. Yang, and K. F.X. Mayer
Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea
Plant Physiology, December 1, 2006; 142(4): 1589 - 1602.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
A. J. K. Koo, H. S. Chung, Y. Kobayashi, and G. A. Howe
Identification of a Peroxisomal Acyl-activating Enzyme Involved in the Biosynthesis of Jasmonic Acid in Arabidopsis
J. Biol. Chem., November 3, 2006; 281(44): 33511 - 33520.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Kankainen, G. Brader, P. Toronen, E. T. Palva, and L. Holm
Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana
Nucleic Acids Res., October 6, 2006; 34(18): e124 - e124.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
I. W. Manfield, C.-H. Jen, J. W. Pinney, I. Michalopoulos, J. R. Bradford, P. M. Gilmartin, and D. R. Westhead
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W504 - W509.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
A. Huffaker, G. Pearce, and C. A. Ryan
An endogenous peptide signal in Arabidopsis activates components of the innate immune response
PNAS, June 27, 2006; 103(26): 10098 - 10103.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
D. R. Hoen, K. C. Park, N. Elrouby, Z. Yu, N. Mohabir, R. K. Cowan, and T. E. Bureau
Transposon-Mediated Expansion and Diversification of a Family of ULP-like Genes
Mol. Biol. Evol., June 1, 2006; 23(6): 1254 - 1268.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
I. Gadjev, S. Vanderauwera, T. S. Gechev, C. Laloi, I. N. Minkov, V. Shulaev, K. Apel, D. Inze, R. Mittler, and F. Van Breusegem
Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis
Plant Physiology, June 1, 2006; 141(2): 436 - 445.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
K. W. Bock, D. Honys, J. M. Ward, S. Padmanaban, E. P. Nawrocki, K. D. Hirschi, D. Twell, and H. Sze
Integrating Membrane Transport with Male Gametophyte Development and Function through Transcriptomics.
Plant Physiology, April 1, 2006; 140(4): 1151 - 1168.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
S. Ma, Q. Gong, and H. J. Bohnert
Dissecting salt stress pathways
J. Exp. Bot., March 1, 2006; 57(5): 1097 - 1107.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
Q. K.-G. Tan and V. F. Irish
The Arabidopsis Zinc Finger-Homeodomain Genes Encode Proteins with Unique Biochemical Properties That Are Coordinately Expressed during Floral Development
Plant Physiology, March 1, 2006; 140(3): 1095 - 1108.
[Abstract] [Full Text] [PDF]

Home page
 Plant Cell PhysiolHome page
H. Azevedo, C. Conde, H. Geros, and R. M. Tavares
The Non-host Pathogen Botrytis cinerea Enhances Glucose Transport in Pinus pinaster Suspension-cultured Cells
Plant Cell Physiol., February 1, 2006; 47(2): 290 - 298.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
S. A. Coupe, B. G. Palmer, J. A. Lake, S. A. Overy, K. Oxborough, F. I. Woodward, J. E. Gray, and W. P. Quick
Systemic signalling of environmental cues in Arabidopsis leaves
J. Exp. Bot., January 1, 2006; 57(2): 329 - 341.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
Z. Fei, X. Tang, R. Alba, and J. Giovannoni
Tomato Expression Database (TED): a suite of data presentation and analysis tools
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D766 - D770.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
M. L. Engel, R. Holmes-Davis, and S. McCormick
Green Sperm. Identification of Male Gamete Promoters in Arabidopsis
Plant Physiology, August 1, 2005; 138(4): 2124 - 2133.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
B. Usadel, A. Nagel, O. Thimm, H. Redestig, O. E. Blaesing, N. Palacios-Rojas, J. Selbig, J. Hannemann, M. C. Piques, D. Steinhauser, et al.
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses
Plant Physiology, July 1, 2005; 138(3): 1195 - 1204.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
S. Persson, H. Wei, J. Milne, G. P. Page, and C. R. Somerville
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
PNAS, June 14, 2005; 102(24): 8633 - 8638.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Lisso, D. Steinhauser, T. Altmann, J. Kopka, and C. Mussig
Identification of brassinosteroid-related genes by means of transcript co-response analyses
Nucleic Acids Res., May 12, 2005; 33(8): 2685 - 2696.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
Z. Kwade, A. Swiaatek, A. Azmi, A. Goossens, D. Inze, H. Van Onckelen, and L. Roef
Identification of Four Adenosine Kinase Isoforms in Tobacco By-2 Cells and Their Putative Role in the Cell Cycle-regulated Cytokinin Metabolism
J. Biol. Chem., April 29, 2005; 280(17): 17512 - 17519.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. Allemeersch, S. Durinck, R. Vanderhaeghen, P. Alard, R. Maes, K. Seeuws, T. Bogaert, K. Coddens, K. Deschouwer, P. Van Hummelen, et al.
Benchmarking the CATMA Microarray. A Novel Tool forArabidopsis Transcriptome Analysis
Plant Physiology, February 1, 2005; 137(2): 588 - 601.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Shen, J. Gong, R. A. Caldo, D. Nettleton, D. Cook, R. P. Wise, and J. A. Dickerson
BarleyBase--an expression profiling database for plant genomics
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D614 - D618.
[Abstract] [Full Text] [PDF]

Home page
 J Exp BotHome page
R. G. Walters
Towards an understanding of photosynthetic acclimation
J. Exp. Bot., January 1, 2005; 56(411): 435 - 447.
[Abstract] [Full Text] [PDF]

Home page
 Plant Cell PhysiolHome page
A. Nakhamchik, Z. Zhao, N. J. Provart, S.-H. Shiu, S. K. Keatley, R. K. Cameron, and D. R. Goring
A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches
Plant Cell Physiol., December 15, 2004; 45(12): 1875 - 1881.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
P. Zimmermann, M. Hirsch-Hoffmann, L. Hennig, and W. Gruissem
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
Plant Physiology, September 1, 2004; 136(1): 2621 - 2632.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
L. Hennig, W. Gruissem, U. Grossniklaus, and C. Kohler
Transcriptional Programs of Early Reproductive Stages in Arabidopsis
Plant Physiology, July 1, 2004; 135(3): 1765 - 1775.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
E. J.B. Williams and D. J. Bowles
Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
Genome Res., June 1, 2004; 14(6): 1060 - 1067.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
R. G. Walters, D. G. Ibrahim, P. Horton, and N. J. Kruger
A Mutant of Arabidopsis Lacking the Triose-Phosphate/Phosphate Translocator Reveals Metabolic Regulation of Starch Breakdown in the Light
Plant Physiology, June 1, 2004; 135(2): 891 - 906.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.