Skip Navigation

Nucleic Acids Research 2005 33(Database Issue):D34-D38; doi:10.1093/nar/gki063
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (76K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Benson, D. A.
Right arrow Articles by Wheeler, D. L.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Benson, D. A.
Right arrow Articles by Wheeler, D. L.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2005, Vol. 33, Database issue D34-D38
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

GenBank

Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell and David L. Wheeler*

Department of Health and Human Services, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA

* To whom correspondence should be addressed. Tel: +1 301 435 5950; Fax: +1 301 480 9241; Email: wheeler{at}ncbi.nlm.nih.gov

Received September 15, 2004; Revised and Accepted October 5, 2004

GenBank® is a comprehensive database that contains publicly available DNA sequences for more than 165 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in the UK and the DNA Data Bank of Japan helps to ensure worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at http://www.ncbi.nlm.nih.gov.


The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Nucleic Acids ResHome page
B. Lee and G. Shin
CleanEST: a database of cleansed EST libraries
Nucleic Acids Res., October 2, 2008; (2008) gkn648v1.
[Abstract] [Full Text] [PDF]


Home page
Poult. Sci.Home page
M. J. Rothrock Jr., K. L. Cook, J. G. Warren, and K. Sistani
The Effect of Alum Addition on Microbial Communities in Poultry Litter
Poult. Sci., August 1, 2008; 87(8): 1493 - 1503.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
K.-H. Kim, W.-T. Im, and S.-T. Lee
Hymenobacter soli sp. nov., isolated from grass soil
Int J Syst Evol Microbiol, April 1, 2008; 58(4): 941 - 945.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A. Sindhu, S. Chintamanani, A. S. Brandt, M. Zanis, S. R. Scofield, and G. S. Johal
A guardian of grasses: Specific origin and conservation of a unique disease-resistance gene in the grass lineage
PNAS, February 5, 2008; 105(5): 1762 - 1767.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. Roma, M. Sardiello, G. Cobellis, P. Cruz, G. Lago, R. Sanges, and E. Stupka
The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D741 - D746.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
T. R. Dreszer, G. D. Wall, D. Haussler, and K. S. Pollard
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
Genome Res., October 1, 2007; 17(10): 1420 - 1430.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
H. Carroll, W. Beckstead, T. O'Connor, M. Ebbert, M. Clement, Q. Snell, and D. McClellan
DNA reference alignment benchmarks based on tertiary structure of encoded proteins
Bioinformatics, October 1, 2007; 23(19): 2648 - 2649.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
D. M. Cook, E. DeCrescenzo Henriksen, R. Upchurch, and J. B. D. Peterson
Isolation of Polymer-Degrading Bacteria and Characterization of the Hindgut Bacterial Community from the Detritus-Feeding Larvae of Tipula abdominalis (Diptera: Tipulidae)
Appl. Envir. Microbiol., September 1, 2007; 73(17): 5683 - 5686.
[Abstract] [Full Text] [PDF]


Home page
Poult. Sci.Home page
N. Lovanh, K. L. Cook, M. J. Rothrock, D. M. Miles, and K. Sistani
Spatial Shifts in Microbial Population Structure Within Poultry Litter Associated with Physicochemical Properties
Poult. Sci., September 1, 2007; 86(9): 1840 - 1849.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
K. L. S. Ng and S. K. Mishra
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
Bioinformatics, June 1, 2007; 23(11): 1321 - 1330.
[Abstract] [Full Text] [PDF]


Home page
J. Clin. Microbiol.Home page
J. S. Ellis, J. W. Smith, S. Braham, M. Lock, K. Barlow, and M. C. Zambon
Design and Validation of an H5 TaqMan Real-Time One-Step Reverse Transcription-PCR and Confirmatory Assays for Diagnosis and Verification of Influenza A Virus H5 Infections in Humans
J. Clin. Microbiol., May 1, 2007; 45(5): 1535 - 1543.
[Abstract] [Full Text] [PDF]


Home page
Clin. Chem.Home page
A. Misra, J.-Y. Hong, and S. Kim
Multiplex Genotyping of Cytochrome P450 Single-Nucleotide Polymorphisms by Use of MALDI-TOF Mass Spectrometry
Clin. Chem., May 1, 2007; 53(5): 933 - 939.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
D. V. Volokhov, S. Duperrier, A. A. Neverov, J. George, C. Buchrieser, and A. D. Hitchins
The Presence of the Internalin Gene in Natural Atypically Hemolytic Listeria innocua Strains Suggests Descent from L. monocytogenes
Appl. Envir. Microbiol., March 15, 2007; 73(6): 1928 - 1939.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
J. Z. Ni, L. Grate, J. P. Donohue, C. Preston, N. Nobida, G. O'Brien, L. Shiue, T. A. Clark, J. E. Blume, and M. Ares Jr.
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
Genes & Dev., March 15, 2007; 21(6): 708 - 718.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
A. R. Parks and J. E. Peters
Transposon Tn7 Is Widespread in Diverse Bacteria and Forms Genomic Islands
J. Bacteriol., March 1, 2007; 189(5): 2170 - 2173.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
P. Offre, B. Pivato, S. Siblot, E. Gamalero, T. Corberand, P. Lemanceau, and C. Mougel
Identification of Bacterial Groups Preferentially Associated with Mycorrhizal Roots of Medicago truncatula
Appl. Envir. Microbiol., February 1, 2007; 73(3): 913 - 921.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
S. NG Kwang Loong and S. K. Mishra
Unique folding of precursor microRNAs: Quantitative evidence and implications for de novo identification
RNA, February 1, 2007; 13(2): 170 - 187.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
B. Lee, T. Kim, S.-K. Kim, K. H. Lee, and D. Lee
Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D47 - D50.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Szymanski, V. A. Erdmann, and J. Barciszewski
Noncoding RNAs database (ncRNAdb)
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D162 - D164.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
R. Geslain, E. Aeby, T. Guitart, T. E. Jones, M. C. de Moura, F. Charriere, A. Schneider, and L. R. de Pouplana
Trypanosoma Seryl-tRNA Synthetase Is a Metazoan-like Enzyme with High Affinity for tRNASec
J. Biol. Chem., December 15, 2006; 281(50): 38217 - 38225.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
M. R. Stam, E. G.J. Danchin, C. Rancurel, P. M. Coutinho, and B. Henrissat
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of {alpha}-amylase-related proteins
Protein Eng. Des. Sel., December 1, 2006; 19(12): 555 - 562.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
S. Draghici, S. Sellamuthu, and P. Khatri
Babel's tower revisited: a universal resource for cross-referencing across annotation databases
Bioinformatics, December 1, 2006; 22(23): 2934 - 2939.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
R. A. George, J. Y. Liu, L. L. Feng, R. J. Bryson-Richardson, D. Fatkin, and M. A. Wouters
Analysis of protein sequence and interaction data for candidate disease gene prediction
Nucleic Acids Res., November 14, 2006; 34(19): e130 - e130.
[Abstract] [Full Text] [PDF]


Home page
Vet PatholHome page
B. Etschmann, B. Wilcken, K. Stoevesand, A. von der Schulenburg, and A. Sterner-Kock
Selection of Reference Genes for Quantitative Real-time PCR Analysis in Canine Mammary Tumors Using the GeNorm Algorithm.
Vet. Pathol., November 1, 2006; 43(6): 934 - 942.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
S. Foret and R. Maleszka
Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera)
Genome Res., November 1, 2006; 16(11): 1404 - 1413.
[Abstract] [Full Text] [PDF]


Home page
GlycobiologyHome page
N. R. Chandra, N. Kumar, J. Jeyakani, D. D. Singh, S. B. Gowda, and M. N. Prathima
Lectindb: a plant lectin database
Glycobiology, October 1, 2006; 16(10): 938 - 946.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Bern, D. Goldberg, and E. Lyashenko
Data mining for proteins characteristic of clades
Nucleic Acids Res., September 11, 2006; 34(16): 4342 - 4353.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
Y. Kourkoutas, P. Kandylis, P. Panas, J. S. G. Dooley, P. Nigam, and A. A. Koutinas
Evaluation of Freeze-Dried Kefir Coculture as Starter in Feta-Type Cheese Production
Appl. Envir. Microbiol., September 1, 2006; 72(9): 6124 - 6135.
[Abstract] [Full Text] [PDF]


Home page
Toxicol SciHome page
C. J. Mattingly, M. C. Rosenstein, A. P. Davis, G. T. Colby, J. N. Forrest Jr, and J. L. Boyer
The Comparative Toxicogenomics Database: A Cross-Species Resource for Building Chemical-Gene Interaction Networks
Toxicol. Sci., August 1, 2006; 92(2): 587 - 595.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
H. Dahle and N.-K. Birkeland
Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a North Sea oil well.
Int J Syst Evol Microbiol, July 1, 2006; 56(Pt 7): 1539 - 1545.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. ProteomicsHome page
L. Zhang, C. Shao, D. Zheng, and Y. Gao
An Integrated Machine Learning System to Computationally Screen Protein Databases for Protein Binding Peptide Ligands
Mol. Cell. Proteomics, July 1, 2006; 5(7): 1224 - 1232.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P. Khatri, V. Desai, A. L. Tarca, S. Sellamuthu, D. E. Wildman, R. Romero, and S. Draghici
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W626 - W631.
[Abstract] [Full Text] [PDF]


Home page
Protein Sci.Home page
S. L. Mowbray, L. T. Elfstrom, K. M. Ahlgren, C. E. Andersson, and M. Widersten
X-ray structure of potato epoxide hydrolase sheds light on substrate specificity in plant enzymes
Protein Sci., July 1, 2006; 15(7): 1628 - 1637.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
H. Ago, M. Oda, M. Takahashi, H. Tsuge, S. Ochi, N. Katunuma, M. Miyano, and J. Sakurai
Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus
J. Biol. Chem., June 9, 2006; 281(23): 16157 - 16167.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
J. L. Gattis, A. V. Washington, M. M. Chisholm, L. Quigley, A. Szyk, D. W. McVicar, and J. Lubkowski
The Structure of the Extracellular Domain of Triggering Receptor Expressed on Myeloid Cells Like Transcript-1 and Evidence for a Naturally Occurring Soluble Fragment
J. Biol. Chem., May 12, 2006; 281(19): 13396 - 13403.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
P.-E. Fournier, K. Suhre, G. Fournous, and D. Raoult
Estimation of prokaryote genomic DNA G+C content by sequencing universally conserved genes.
Int J Syst Evol Microbiol, May 1, 2006; 56(Pt 5): 1025 - 1029.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
F. Hsu, W. J. Kent, H. Clawson, R. M. Kuhn, M. Diekhans, and D. Haussler
The UCSC Known Genes
Bioinformatics, May 1, 2006; 22(9): 1036 - 1046.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
R. Aragues, D. Jaeggi, and B. Oliva
PIANA: protein interactions and network analysis
Bioinformatics, April 15, 2006; 22(8): 1015 - 1017.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
D. Volokhov, J. George, C. Anderson, R. E. Duvall, and A. D. Hitchins
Discovery of Natural Atypical Nonhemolytic Listeria seeligeri Isolates
Appl. Envir. Microbiol., April 1, 2006; 72(4): 2439 - 2448.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
G. K. McEwen, A. Woolfe, D. Goode, T. Vavouri, H. Callaway, and G. Elgar
Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis
Genome Res., April 1, 2006; 16(4): 451 - 465.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
P. C. Feijao, L. S. Neiva, A. M. L. d. Azeredo-Espin, and A. C. Lessinger
AMiGA: the arthropodan mitochondrial genomes accessible database
Bioinformatics, April 1, 2006; 22(7): 902 - 903.
[Abstract] [Full Text] [PDF]


Home page
BloodHome page
C. Levy, Y.-N. Lee, H. Nechushtan, O. Schueler-Furman, A. Sonnenblick, S. Hacohen, and E. Razin
Identifying a common molecular mechanism for inhibition of MITF and STAT3 by PIAS3
Blood, April 1, 2006; 107(7): 2839 - 2845.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
V. Gonzalez, R. I. Santamaria, P. Bustos, I. Hernandez-Gonzalez, A. Medrano-Soto, G. Moreno-Hagelsieb, S. C. Janga, M. A. Ramirez, V. Jimenez-Jacinto, J. Collado-Vides, et al.
The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
PNAS, March 7, 2006; 103(10): 3834 - 3839.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
M. A. Smith, N. E. Woodley, D. H. Janzen, W. Hallwachs, and P. D. N. Hebert
From the Cover: DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae)
PNAS, March 7, 2006; 103(10): 3657 - 3662.
[Abstract] [Full Text] [PDF]


Home page
J. Clin. Microbiol.Home page
M.-C. Rowlinson, P. LeBourgeois, K. Ward, Y. Song, S. M. Finegold, and D. A. Bruckner
Isolation of a Strictly Anaerobic Strain of Staphylococcus epidermidis.
J. Clin. Microbiol., March 1, 2006; 44(3): 857 - 860.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
P. H. Janssen
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes.
Appl. Envir. Microbiol., March 1, 2006; 72(3): 1719 - 1728.
[Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
M. Sait, K. E. R. Davis, and P. H. Janssen
Effect of pH on Isolation and Distribution of Members of Subdivision 1 of the Phylum Acidobacteria Occurring in Soil.
Appl. Envir. Microbiol., March 1, 2006; 72(3): 1852 - 1857.
[Abstract] [Full Text] [PDF]


Home page
Brief Funct Genomic ProteomicHome page
A. Ma'ayan and R. Iyengar
From components to regulatory motifs in signalling networks
Brief Funct Genomic Proteomic, March 1, 2006; 5(1): 57 - 61.



Home page
Hum Mol GenetHome page
G. Abou-Sleymane, F. Chalmel, D. Helmlinger, A. Lardenois, C. Thibault, C. Weber, K. Merienne, J.-L. Mandel, O. Poch, D. Devys, et al.
Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program
Hum. Mol. Genet., March 1, 2006; 15(5): 691 - 703.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
M. Semon, J. R. Lobry, and L. Duret
No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans
Mol. Biol. Evol., March 1, 2006; 23(3): 523 - 529.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
N. Elango, J. W. Thomas, NISC Comparative Sequencing Program, and S. V. Yi
Variable molecular clocks in hominoids
PNAS, January 31, 2006; 103(5): 1370 - 1375.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
M. Pesaro and F. Widmer
Identification and Specific Detection of a Novel Pseudomonadaceae Cluster Associated with Soils from Winter Wheat Plots of a Long-Term Agricultural Field Experiment
Appl. Envir. Microbiol., January 1, 2006; 72(1): 37 - 43.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
D. A. Rodionov, P. Hebbeln, M. S. Gelfand, and T. Eitinger
Comparative and Functional Genomic Analysis of Prokaryotic Nickel and Cobalt Uptake Transporters: Evidence for a Novel Group of ATP-Binding Cassette Transporters
J. Bacteriol., January 1, 2006; 188(1): 317 - 327.
[Abstract] [Full Text] [PDF]


Home page
Protein Sci.Home page
R. Schwartz and J. King
Frequencies of hydrophobic and hydrophilic runs and alternations in proteins of known structure
Protein Sci., January 1, 2006; 15(1): 102 - 112.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler
GenBank
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D16 - D20.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Mokrejs, V. Vopalensky, O. Kolenaty, T. Masek, Z. Feketova, P. Sekyrova, B. Skaloudova, V. Kriz, and M. Pospisek
IRESite: the database of experimentally verified IRES structures (www.iresite.org)
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D125 - D130.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
T. Wu, J. Wang, C. Liu, Y. Zhang, B. Shi, X. Zhu, Z. Zhang, G. Skogerbo, L. Chen, H. Lu, et al.
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D150 - D152.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. L. Wheeler, T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, et al.
Database resources of the National Center for Biotechnology Information
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D173 - D180.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page