Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (567K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (35)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Tzafrir, I.
Right arrow Articles by Meinke, D.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Tzafrir, I.
Right arrow Articles by Meinke, D.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2003, Vol. 31, No. 1 90-93
© 2003 Oxford University Press

The Arabidopsis SeedGenes Project

Iris Tzafrir, Allan Dickerman1, Olga Brazhnik1, Quoc Nguyen1, John McElver2, Catherine Frye2, David Patton2 and David Meinke*

Department of Botany, Oklahoma State University, Stillwater, OK 74078, USA 1 Virginia Bioinformatics Institute, Blacksburg, VA 24061, USA 2 Syngenta, Research Triangle Park, NC 27709, USA

*To whom correspondence should be addressed. Tel: +1 4057446549; Fax: +1 4057447074; Email: meinke{at}okstate.edu

ABSTRACT

The SeedGenes database (http://www.seedgenes.org) presents molecular and phenotypic information on essential, non-redundant genes of Arabidopsis that give a seed phenotype when disrupted by mutation. Experimental details are synthesized for efficient use by the community and organized into two major sections in the database, one dealing with genes and the other with mutant alleles. The database can be queried for detailed information on a single gene to create a SeedGenes Profile. Queries can also generate lists of genes or mutants that fit specified criteria. The long-term goal is to establish a complete collection of Arabidopsis genes that give a knockout phenotype. This information is needed to focus attention on genes with important cellular functions in a model plant and to assess from a genetic perspective the extent of functional redundancy in the Arabidopsis genome.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Plant Physiol.Home page
X. Tang, A. Hou, M. Babu, V. Nguyen, L. Hurtado, Q. Lu, J. C. Reyes, A. Wang, W. A. Keller, J. J. Harada, et al.
The Arabidopsis BRAHMA Chromatin-Remodeling ATPase Is Involved in Repression of Seed Maturation Genes in Leaves
Plant Physiology, July 1, 2008; 147(3): 1143 - 1157.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
S. Zhong, H. Li, Z. Bodi, J. Button, L. Vespa, M. Herzog, and R. G. Fray
MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor
PLANT CELL, May 1, 2008; 20(5): 1278 - 1288.
[Abstract] [Full Text] [PDF]

Home page
 Genes Dev.Home page
K. Palma, Q. Zhao, Y. T. Cheng, D. Bi, J. Monaghan, W. Cheng, Y. Zhang, and X. Li
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms
Genes & Dev., June 15, 2007; 21(12): 1484 - 1493.
[Abstract] [Full Text] [PDF]

Home page
 Plant Cell PhysiolHome page
J. H. Ahn, J. Kim, S. J. Yoo, S. Y. Yoo, H. Roh, J.-H. Choi, M. S. Choi, K. S. Chung, E. J. Han, S. M. Hong, et al.
Isolation of 151 Mutants that Have Developmental Defects from T-DNA Tagging
Plant Cell Physiol., January 1, 2007; 48(1): 169 - 178.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
J. Mizoi, M. Nakamura, and I. Nishida
Defects in CTP:PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE Affect Embryonic and Postembryonic Development in Arabidopsis
PLANT CELL, December 1, 2006; 18(12): 3370 - 3385.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
S. Wenkel, F. Turck, K. Singer, L. Gissot, J. Le Gourrierec, A. Samach, and G. Coupland
CONSTANS and the CCAAT Box Binding Complex Share a Functionally Important Domain and Interact to Regulate Flowering of Arabidopsis
PLANT CELL, November 1, 2006; 18(11): 2971 - 2984.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
N. A. Eckardt
Genetic and Epigenetic Regulation of Embryogenesis
PLANT CELL, April 1, 2006; 18(4): 781 - 784.
[Full Text] [PDF]

Home page
 Plant CellHome page
Y.-H. Ding, N.-Y. Liu, Z.-S. Tang, J. Liu, and W.-C. Yang
Arabidopsis GLUTAMINE-RICH PROTEIN23 Is Essential for Early Embryogenesis and Encodes a Novel Nuclear PPR Motif Protein That Interacts with RNA Polymerase II Subunit III
PLANT CELL, April 1, 2006; 18(4): 815 - 830.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
P. D. Jenik, R. E.J. Jurkuta, and M. K. Barton
Interactions between the Cell Cycle and Embryonic Patterning in Arabidopsis Uncovered by a Mutation in DNA Polymerase {varepsilon}
PLANT CELL, December 1, 2005; 17(12): 3362 - 3377.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
X. Chen, S. M. Goodwin, X. Liu, X. Chen, R. A. Bressan, and M. A. Jenks
Mutation of the RESURRECTION1 Locus of Arabidopsis Reveals an Association of Cuticular Wax with Embryo Development
Plant Physiology, October 1, 2005; 139(2): 909 - 919.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. Fan, S. Quan, T. Orth, C. Awai, J. Chory, and J. Hu
The Arabidopsis PEX12 Gene Is Required for Peroxisome Biogenesis and Is Essential for Development
Plant Physiology, September 1, 2005; 139(1): 231 - 239.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
S. Drea, D. J. Leader, B. C. Arnold, P. Shaw, L. Dolan, and J. H. Doonan
Systematic Spatial Analysis of Gene Expression during Wheat Caryopsis Development
PLANT CELL, August 1, 2005; 17(8): 2172 - 2185.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
C. Lurin, C. Andres, S. Aubourg, M. Bellaoui, F. Bitton, C. Bruyere, M. Caboche, C. Debast, J. Gualberto, B. Hoffmann, et al.
Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis
PLANT CELL, August 1, 2004; 16(8): 2089 - 2103.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
I. Tzafrir, R. Pena-Muralla, A. Dickerman, M. Berg, R. Rogers, S. Hutchens, T. C. Sweeney, J. McElver, G. Aux, D. Patton, et al.
Identification of Genes Required for Embryo Development in Arabidopsis
Plant Physiology, July 1, 2004; 135(3): 1206 - 1220.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
L. Rajjou, K. Gallardo, I. Debeaujon, J. Vandekerckhove, C. Job, and D. Job
The Effect of {alpha}-Amanitin on the Arabidopsis Seed Proteome Highlights the Distinct Roles of Stored and Neosynthesized mRNAs during Germination
Plant Physiology, April 1, 2004; 134(4): 1598 - 1613.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
H. Wang, K. Hill, and S. E. Perry
An Arabidopsis RNA Lariat Debranching Enzyme Is Essential for Embryogenesis
J. Biol. Chem., January 9, 2004; 279(2): 1468 - 1473.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
I. A. Sparkes, F. Brandizzi, S. P. Slocombe, M. El-Shami, C. Hawes, and A. Baker
An Arabidopsis pex10 Null Mutant Is Embryo Lethal, Implicating Peroxisomes in an Essential Role during Plant Embryogenesis
Plant Physiology, December 1, 2003; 133(4): 1809 - 1819.
[Abstract] [Full Text]

Home page
 Plant Physiol.Home page
D. Meinke and R. Scholl
The Preservation of Plant Genetic Resources. Experiences with Arabidopsis
Plant Physiology, November 1, 2003; 133(3): 1046 - 1050.
[Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.