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Nucleic Acids Research, 2003, Vol. 31, No. 13 3333-3336
© 2003 Oxford University Press

Motif3D: relating protein sequence motifs to 3D structure

Anna Gaulton* and Teresa K. Attwood

School of Biological Sciences and Department of Computer Science, University of Manchester, Manchester M13 9PT, UK

*To whom correspondence should be addressed. Tel: +44 161 2755980; Fax: +44 161 2755082; Email: agaulton{at}bioinf.man.ac.uk

Motif3D is a web-based protein structure viewer designed to allow sequence motifs, and in particular those contained in the fingerprints of the PRINTS database, to be visualised on three-dimensional (3D) structures. Additional functionality is provided for the rhodopsin-like G protein-coupled receptors, enabling fingerprint motifs of any of the receptors in this family to be mapped onto the single structure available, that of bovine rhodopsin. Motif3D can be used via the web interface available at: http://www.bioinf.man.ac.uk/dbbrowser/motif3d/motif3d.html.


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