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Previous Next 		Contents: Volume 28, Number 18    September 15 2000    [Index by Author] 
      Down Editorial
      Down Articles
      Down NAR Methods Online
 

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Editorial:Back

Editorial
Nucl. Acids Res. 2000 28: 0; doi:10.1093/nar/28.18.0 [Print PDF] [Request Permissions]  

Articles:Back

Joanna Trzcinska-Danielewicz and Jan Fronk
SURVEY AND SUMMARY: Exon–intron organization of genes in the slime mold Physarum polycephalum
Nucl. Acids Res. 2000 28: 3411-3416; doi:10.1093/nar/28.18.3411 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. Aravind, Kira S. Makarova, and Eugene V. Koonin
SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
Nucl. Acids Res. 2000 28: 3417-3432; doi:10.1093/nar/28.18.3417 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Magali Roux-Rouquie and Monique Marilley
Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter
Nucl. Acids Res. 2000 28: 3433-3441; doi:10.1093/nar/28.18.3433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B. Snel, G. Lehmann, P. Bork, and M. A. Huynen
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
Nucl. Acids Res. 2000 28: 3442-3444; doi:10.1093/nar/28.18.3442 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jianming Liu and Kerstin B. Stråby
The human tRNA(m22G26)dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene
Nucl. Acids Res. 2000 28: 3445-3451; doi:10.1093/nar/28.18.3445 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Murray N. Schnare, James C. Collings, David F. Spencer, and Michael W. Gray
The 28S–18S rDNA intergenic spacer from Crithidia fasciculata: repeated sequences, length heterogeneity, putative processing sites and potential interactions between U3 small nucleolar RNA and the ribosomal RNA precursor
Nucl. Acids Res. 2000 28: 3452-3461; doi:10.1093/nar/28.18.3452 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew A. Lukowiak, Sander Granneman, Sharon A. Mattox, Wayne A. Speckmann, Kevin Jones, Helma Pluk, Walther J. van Venrooij, Rebecca M. Terns, and Michael P. Terns
Interaction of the U3-55k protein with U3 snoRNA is mediated by the Box B/C motif of U3 and the WD repeats of U3-55k
Nucl. Acids Res. 2000 28: 3462-3471; doi:10.1093/nar/28.18.3462 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Luda S. Shlyakhtenko, Vladimir N. Potaman, Richard R. Sinden, Alexander A. Gall, and Yuri L. Lyubchenko
Structure and dynamics of three-way DNA junctions: atomic force microscopy studies
Nucl. Acids Res. 2000 28: 3472-3477; doi:10.1093/nar/28.18.3472 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John M. Cho, Daniel J. Song, Josee Bergeron, Naciba Benlimame, Marc S. Wold, and Moulay A. Alaoui-Jamali
RBT1, a novel transcriptional co-activator, binds the second subunit of Replication Protein A
Nucl. Acids Res. 2000 28: 3478-3485; doi:10.1093/nar/28.18.3478 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Liliana Florea, Cathy Riemer, Scott Schwartz, Zheng Zhang, Nikola Stojanovic, Webb Miller, and Michael McClelland
Web-based visualization tools for bacterial genome alignments
Nucl. Acids Res. 2000 28: 3486-3496; doi:10.1093/nar/28.18.3486 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroto Maeda, Nobuyuki Fujita, and Akira Ishihama
Competition among seven Escherichia coli {sigma} subunits: relative binding affinities to the core RNA polymerase
Nucl. Acids Res. 2000 28: 3497-3503; doi:10.1093/nar/28.18.3497 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Remus Thei Dame, Claire Wyman, and Nora Goosen
H-NS mediated compaction of DNA visualised by atomic force microscopy
Nucl. Acids Res. 2000 28: 3504-3510; doi:10.1093/nar/28.18.3504 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E. B. Khomyakova, H. Gousset, J. Liquier, T. Huynh-Dinh, C. Gouyette, M. Takahashi, V. L. Florentiev, and E. Taillandier
Parallel intramolecular DNA triple helix with G and T bases in the third strand stabilized by Zn2+ ions
Nucl. Acids Res. 2000 28: 3511-3516; doi:10.1093/nar/28.18.3511 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sean D. Hooper and Otto G. Berg
Gradients in nucleotide and codon usage along Escherichia coli genes
Nucl. Acids Res. 2000 28: 3517-3523; doi:10.1093/nar/28.18.3517 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hobert H. Wai, Loan Vu, Melanie Oakes, and Masayasu Nomura
Complete deletion of yeast chromosomal rDNA repeats and integration of a new rDNA repeat: use of rDNA deletion strains for functional analysis of rDNA promoter elements in vivo
Nucl. Acids Res. 2000 28: 3524-3534; doi:10.1093/nar/28.18.3524 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Todd Strother, Robert J. Hamers, and Lloyd M. Smith
Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces
Nucl. Acids Res. 2000 28: 3535-3541; doi:10.1093/nar/28.18.3535 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thorsten Halbach, Nico Scheer, and Wolfgang Werr
Transcriptional activation by the PHD finger is inhibited through an adjacent leucine zipper that binds 14-3-3 proteins
Nucl. Acids Res. 2000 28: 3542-3550; doi:10.1093/nar/28.18.3542 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tibor Török, Mátyás Gorjánácz, Peter J. Bryant, and István Kiss
Prod is a novel DNA-binding protein that binds to the 1.686 g/cm3 10 bp satellite repeat of Drosophila melanogaster
Nucl. Acids Res. 2000 28: 3551-3557; doi:10.1093/nar/28.18.3551 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard M. Taylor, Claire J. Whitehouse, and Keith W. Caldecott
The DNA ligase III zinc finger stimulates binding to DNA secondary structure and promotes end joining
Nucl. Acids Res. 2000 28: 3558-3563; doi:10.1093/nar/28.18.3558 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Akira Yamamoto, Mark J. Schofield, Indranil Biswas, and Peggy Hsieh
Requirement for Phe36 for DNA binding and mismatch repair by Escherichia coli MutS protein
Nucl. Acids Res. 2000 28: 3564-3569; doi:10.1093/nar/28.18.3564 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew F. Neuwald and Aleksandar Poleksic
PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of ß-propellers in UV-damaged DNA-binding protein
Nucl. Acids Res. 2000 28: 3570-3580; doi:10.1093/nar/28.18.3570 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nikolina Vlatkovic, Stephanie Guerrera, Ying Li, Stuart Linn, Dale S. Haines, and Mark T. Boyd
MDM2 interacts with the C-terminus of the catalytic subunit of DNA polymerase {varepsilon}
Nucl. Acids Res. 2000 28: 3581-3586; doi:10.1093/nar/28.18.3581 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antonio del Castillo-Olivares and Gregorio Gil
Role of FXR and FTF in bile acid-mediated suppression of cholesterol 7{alpha}-hydroxylase transcription
Nucl. Acids Res. 2000 28: 3587-3593; doi:10.1093/nar/28.18.3587 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valaiporn Rusmintratip, Arthur D. Riggs, and Lawrence C. Sowers
Examination of the DNA substrate selectivity of DNA cytosine methyltransferases using mass tagging
Nucl. Acids Res. 2000 28: 3594-3599; doi:10.1093/nar/28.18.3594 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N. Perez, M. Rehault, and M. Amouyal
A functional assay in Escherichia coli to detect non-assisted interaction between galactose repressor dimers
Nucl. Acids Res. 2000 28: 3600-3604; doi:10.1093/nar/28.18.3600 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pierre Rollini, Lianjun Xu, and R. E. K. Fournier
Stable expression and cell-specific chromatin structure of human {alpha}1-antitrypsin cosmid transgenes in rat hepatoma cells
Nucl. Acids Res. 2000 28: 3605-3614; doi:10.1093/nar/28.18.3605 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Barry Moore, Chad C. Nelson, Britt C. Persson, Raymond F. Gesteland, and John F. Atkins
Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops
Nucl. Acids Res. 2000 28: 3615-3624; doi:10.1093/nar/28.18.3615 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christopher J. Wilds and Masad J. Damha
2'-Deoxy-2'-fluoro-ß-D-arabinonucleosides and oligonucleotides (2'F-ANA): synthesis and physicochemical studies
Nucl. Acids Res. 2000 28: 3625-3635; doi:10.1093/nar/28.18.3625 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Qiaoping Yuan, Feng Liang, Joseph Hsiao, Victoria Zismann, Maria-Ines Benito, John Quackenbush, Rod Wing, and Robin Buell
Anchoring of rice BAC clones to the rice genetic map in silico
Nucl. Acids Res. 2000 28: 3636-3641; doi:10.1093/nar/28.18.3636 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Itaru Ohsugi, Yoshiki Tokutake, Noriyuki Suzuki, Toshinori Ide, Masanobu Sugimoto, and Yasuhiro Furuichi
Telomere repeat DNA forms a large non-covalent complex with unique cohesive properties which is dissociated by Werner syndrome DNA helicase in the presence of replication protein A
Nucl. Acids Res. 2000 28: 3642-3648; doi:10.1093/nar/28.18.3642 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Junjian Z. Chen, Junzhuan Qiu, Binghui Shen, and Gerald P. Holmquist
Mutational spectrum analysis of RNase H(35) deficient Saccharomyces cerevisiae using fluorescence-based directed termination PCR
Nucl. Acids Res. 2000 28: 3649-3656; doi:10.1093/nar/28.18.3649 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Feng Liang, Ingeborg Holt, Geo Pertea, Svetlana Karamycheva, Steven L. Salzberg, and John Quackenbush
An optimized protocol for analysis of EST sequences
Nucl. Acids Res. 2000 28: 3657-3665; doi:10.1093/nar/28.18.3657 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jong-Wook Kim, Hyung-Cheol Kim, Gyoung-Mi Kim, Jun-Mo Yang, Jef D. Boeke, and Kiebang Nam
Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants
Nucl. Acids Res. 2000 28: 3666-3673; doi:10.1093/nar/28.18.3666 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frédéric Pileur, Jean-Jacques Toulme, and Christian Cazenave
Eukaryotic ribonucleases HI and HII generate characteristic hydrolytic patterns on DNA–RNA hybrids: further evidence that mitochondrial RNase H is an RNase HII
Nucl. Acids Res. 2000 28: 3674-3683; doi:10.1093/nar/28.18.3674 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Said Aoufouchi, Eric Flatter, Auriel Dahan, Ahmad Faili, Barbara Bertocci, Sebastien Storck, Frédéric Delbos, Laurentiu Cocea, Neetu Gupta, Jean-Claude Weill, and Claude-Agnès Reynaud
Two novel human and mouse DNA polymerases of the polX family
Nucl. Acids Res. 2000 28: 3684-3693; doi:10.1093/nar/28.18.3684 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:Back

S. Hahner, A. Schneider, A. Ingendoh, and J. Mosner
Analysis of short tandem repeat polymorphisms by electrospray ion trap mass spectrometry
Nucl. Acids Res. 2000 28: e82; doi:10.1093/nar/28.18.e82 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Markus Kurz, Ke Gu, and Peter A. Lohse
Psoralen photo-crosslinked mRNA–puromycin conjugates: a novel template for the rapid and facile preparation of mRNA–protein fusions
Nucl. Acids Res. 2000 28: e83; doi:10.1093/nar/28.18.e83 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael Orford, Mikhail Nefedov, Jim Vadolas, Faten Zaibak, Robert Williamson, and Panayiotis A. Ioannou
Engineering EGFP reporter constructs into a 200 kb human ß-globin BAC clone using GET Recombination
Nucl. Acids Res. 2000 28: e84; doi:10.1093/nar/28.18.e84 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.