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Previous Next 		Contents: Volume 30, Number 1    January 1 2002    [Index by Author] 
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Editorial:Back

Editorial
Nucl. Acids Res. 2002 30: 0; doi:10.1093/nar/30.1.0 [Print PDF] [Request Permissions]  

Articles:Back

Andreas D. Baxevanis
The Molecular Biology Database Collection: 2002 update
Nucl. Acids Res. 2002 30: 1-12; doi:10.1093/nar/30.1.1 [Abstract] [FREE Full Text] [Print PDF] [Database Listing] [Request Permissions]  

David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, and Barbara A. Rapp
Database resources of the National Center for Biotechnology Information: 2002 update
Nucl. Acids Res. 2002 30: 13-16; doi:10.1093/nar/30.1.13 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp, and David L. Wheeler
GenBank
Nucl. Acids Res. 2002 30: 17-20; doi:10.1093/nar/30.1.17 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Evelyn Camon, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Nicole Redaschi, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, and Robert Vaughan
The EMBL Nucleotide Sequence Database
Nucl. Acids Res. 2002 30: 21-26; doi:10.1093/nar/30.1.21 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y. Tateno, T. Imanishi, S. Miyazaki, K. Fukami-Kobayashi, N. Saitou, H. Sugawara, and T. Gojobori
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
Nucl. Acids Res. 2002 30: 27-30; doi:10.1093/nar/30.1.27 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H. W. Mewes, D. Frishman, U. Güldener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Münsterkötter, S. Rudd, and B. Weil
MIPS: a database for genomes and protein sequences
Nucl. Acids Res. 2002 30: 31-34; doi:10.1093/nar/30.1.31 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, and Winona C. Barker
The Protein Information Resource: an integrated public resource of functional annotation of proteins
Nucl. Acids Res. 2002 30: 35-37; doi:10.1093/nar/30.1.35 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T. Hubbard, D. Barker, E. Birney, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, and M. Clamp
The Ensembl genome database project
Nucl. Acids Res. 2002 30: 38-41; doi:10.1093/nar/30.1.38 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, and Akihiro Nakaya
The KEGG databases at GenomeNet
Nucl. Acids Res. 2002 30: 42-46; doi:10.1093/nar/30.1.42 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ida Schomburg, Antje Chang, and Dietmar Schomburg
BRENDA, enzyme data and metabolic information
Nucl. Acids Res. 2002 30: 47-49; doi:10.1093/nar/30.1.47 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, and Roland J. Siezen
EXProt: a database for proteins with an experimentally verified function
Nucl. Acids Res. 2002 30: 50-51; doi:10.1093/nar/30.1.50 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ada Hamosh, Alan F. Scott, Joanna Amberger, Carol Bocchini, David Valle, and Victor A. McKusick
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
Nucl. Acids Res. 2002 30: 52-55; doi:10.1093/nar/30.1.52 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter D. Karp, Monica Riley, Milton Saier, Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides, and Socorro Gama-Castro
The EcoCyc Database
Nucl. Acids Res. 2002 30: 56-58; doi:10.1093/nar/30.1.56 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter D. Karp, Monica Riley, Suzanne M. Paley, and Alida Pellegrini-Toole
The MetaCyc Database
Nucl. Acids Res. 2002 30: 59-61; doi:10.1093/nar/30.1.59 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ivan Moszer, Louis M. Jones, Sandrine Moreira, Cécilia Fabry, and Antoine Danchin
SubtiList: the reference database for the Bacillus subtilis genome
Nucl. Acids Res. 2002 30: 62-65; doi:10.1093/nar/30.1.62 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masaki Fumoto, Satoru Miyazaki, and Hideaki Sugawara
Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more
Nucl. Acids Res. 2002 30: 66-68; doi:10.1093/nar/30.1.66 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, and J. Michael Cherry
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
Nucl. Acids Res. 2002 30: 69-72; doi:10.1093/nar/30.1.69 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anuj Kumar, Kei-Hoi Cheung, Nick Tosches, Peter Masiar, Yang Liu, Perry Miller, and Michael Snyder
The TRIPLES database: a community resource for yeast molecular biology
Nucl. Acids Res. 2002 30: 73-75; doi:10.1093/nar/30.1.73 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Stéphane Le Crom, Frédéric Devaux, Claude Jacq, and Philippe Marc
yMGV: helping biologists with yeast microarray data mining
Nucl. Acids Res. 2002 30: 76-79; doi:10.1093/nar/30.1.76 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Georg Habeler, Klaus Natter, Gerhard G. Thallinger, Matthew E. Crawford, Sepp D. Kohlwein, and Zlatko Trajanoski
YPL.db: the Yeast Protein Localization database
Nucl. Acids Res. 2002 30: 80-83; doi:10.1093/nar/30.1.80 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lisa Kreppel and Alan R. Kimmel
Genomic database resources for Dictyostelium discoideum
Nucl. Acids Res. 2002 30: 84-86; doi:10.1093/nar/30.1.84 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Amit Bahl, Brian Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, and Christian J. Stoeckert, Jr
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)
Nucl. Acids Res. 2002 30: 87-90; doi:10.1093/nar/30.1.87 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heiko Schoof, Paolo Zaccaria, Heidrun Gundlach, Kai Lemcke, Stephen Rudd, Grigory Kolesov, Roland Arnold, H. W. Mewes, and Klaus F. X. Mayer
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome
Nucl. Acids Res. 2002 30: 91-93; doi:10.1093/nar/30.1.91 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F. Samson, V. Brunaud, S. Balzergue, B. Dubreucq, L. Lepiniec, G. Pelletier, M. Caboche, and A. Lecharny
FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants
Nucl. Acids Res. 2002 30: 94-97; doi:10.1093/nar/30.1.94 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katsumi Sakata, Yoshiaki Nagamura, Hisataka Numa, Baltazar A. Antonio, Hideki Nagasaki, Atsuko Idonuma, Wakako Watanabe, Yuji Shimizu, Ikuo Horiuchi, Takashi Matsumoto, Takuji Sasaki, and Kenichi Higo
RiceGAAS: an automated annotation system and database for rice genome sequence
Nucl. Acids Res. 2002 30: 98-102; doi:10.1093/nar/30.1.98 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, and Lincoln Stein
Gramene: a resource for comparative grass genomics
Nucl. Acids Res. 2002 30: 103-105; doi:10.1093/nar/30.1.103 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

The FlyBase Consortium
The FlyBase database of the Drosophila genome projects and community literature
Nucl. Acids Res. 2002 30: 106-108; doi:10.1093/nar/30.1.106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yves Van de Peer, John S. Taylor, Jayabalan Joseph, and Axel Meyer
Wanda: a database of duplicated fish genes
Nucl. Acids Res. 2002 30: 109-112; doi:10.1093/nar/30.1.109 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Judith A. Blake, Joel E. Richardson, Carol J. Bult, Jim A. Kadin, Janan T. Eppig, and The Mouse Genome Database Group
The Mouse Genome Database (MGD): the model organism database for the laboratory mouse
Nucl. Acids Res. 2002 30: 113-115; doi:10.1093/nar/30.1.113 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hidemasa Bono, Takeya Kasukawa, Masaaki Furuno, Yoshihide Hayashizaki, and Yasushi Okazaki
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones
Nucl. Acids Res. 2002 30: 116-118; doi:10.1093/nar/30.1.116 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, and Kazuhiro W. Makabe
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags
Nucl. Acids Res. 2002 30: 119-120; doi:10.1093/nar/30.1.119 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stanton L. Martin, Barbara P. Blackmon, Ravi Rajagopalan, Thomas D. Houfek, Robert G. Sceeles, Sheila O. Denn, Thomas K. Mitchell, Douglas E. Brown, Rod A. Wing, and Ralph A. Dean
MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea
Nucl. Acids Res. 2002 30: 121-124; doi:10.1093/nar/30.1.121 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Simon Twigger, Jian Lu, Mary Shimoyama, Dan Chen, Dean Pasko, Hanping Long, Jessica Ginster, Chin-Fu Chen, Rajni Nigam, Anne Kwitek, Janan Eppig, Lois Maltais, Donna Maglott, Greg Schuler, Howard Jacob, and Peter J. Tonellato
Rat Genome Database (RGD): mapping disease onto the genome
Nucl. Acids Res. 2002 30: 125-128; doi:10.1093/nar/30.1.125 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Anthony Kerlavage, Vivien Bonazzi, Matteo di Tommaso, Charles Lawrence, Peter Li, Frank Mayberry, Richard Mural, Marc Nodell, Mark Yandell, Jinghui Zhang, and Paul Thomas
The Celera Discovery SystemTM
Nucl. Acids Res. 2002 30: 129-136; doi:10.1093/nar/30.1.129 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter E. Hodges, Pauline M. Carrico, Jennifer D. Hogan, Kathy E. O’Neill, J. J. Owen, Mary Mangan, Brian P. Davis, Joan E. Brooks, and James I. Garrels
Annotating the human proteome: the Human Proteome Survey Database (HumanPSDTM) and an in-depth target database for G protein-coupled receptors (GPCR-PDTM) from Incyte Genomics
Nucl. Acids Res. 2002 30: 137-141; doi:10.1093/nar/30.1.137 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Claude-Alain H. Roten, Patrick Gamba, Jean-Luc Barblan, and Dimitri Karamata
Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes
Nucl. Acids Res. 2002 30: 142-144; doi:10.1093/nar/30.1.142 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Donald G. Gilbert
euGenes: a eukaryote genome information system
Nucl. Acids Res. 2002 30: 145-148; doi:10.1093/nar/30.1.145 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Samson Chien, Lawrence T. Reiter, Ethan Bier, and Michael Gribskov
Homophila: human disease gene cognates in Drosophila
Nucl. Acids Res. 2002 30: 149-151; doi:10.1093/nar/30.1.149 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mika Hirakawa
HOWDY: an integrated database system for human genome research
Nucl. Acids Res. 2002 30: 152-157; doi:10.1093/nar/30.1.152 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Mika Hirakawa, Toshihiro Tanaka, Yoichi Hashimoto, Masako Kuroda, Toshihisa Takagi, and Yusuke Nakamura
JSNP: a database of common gene variations in the Japanese population
Nucl. Acids Res. 2002 30: 158-162; doi:10.1093/nar/30.1.158 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, and Teri E. Klein
PharmGKB: the Pharmacogenetics Knowledge Base
Nucl. Acids Res. 2002 30: 163-165; doi:10.1093/nar/30.1.163 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Reiko Kikuno, Takahiro Nagase, Mina Waki, and Osamu Ohara
HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project
Nucl. Acids Res. 2002 30: 166-168; doi:10.1093/nar/30.1.166 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hester M. Wain, Michael Lush, Fabrice Ducluzeau, and Sue Povey
Genew: the Human Gene Nomenclature Database
Nucl. Acids Res. 2002 30: 169-171; doi:10.1093/nar/30.1.169 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, and Cecilia Saccone
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002
Nucl. Acids Res. 2002 30: 172-173; doi:10.1093/nar/30.1.172 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cecilia Lanave, Flavio Licciulli, Mariateresa De Robertis, Alessandra Marolla, and Marcella Attimonelli
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
Nucl. Acids Res. 2002 30: 174-175; doi:10.1093/nar/30.1.174 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Maciej Szymanski, Miroslawa Z. Barciszewska, Volker A. Erdmann, and Jan Barciszewski
5S Ribosomal RNA Database
Nucl. Acids Res. 2002 30: 176-178; doi:10.1093/nar/30.1.176 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kelly P. Williams
The tmRNA Website: invasion by an intron
Nucl. Acids Res. 2002 30: 179-182; doi:10.1093/nar/30.1.179 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Wuyts, Yves Van de Peer, Tina Winkelmans, and Rupert De Wachter
The European database on small subunit ribosomal RNA
Nucl. Acids Res. 2002 30: 183-185; doi:10.1093/nar/30.1.183 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Y.-H. Huang, Y.-T. Chen, J.-J. Lai, S.-T. Yang, and U.-C. Yang
PALS db: Putative Alternative Splicing database
Nucl. Acids Res. 2002 30: 186-190; doi:10.1093/nar/30.1.186 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Sakharkar, F. Passetti, J. E. de Souza, M. Long, and S. J. de Souza
ExInt: an Exon Intron Database
Nucl. Acids Res. 2002 30: 191-194; doi:10.1093/nar/30.1.191 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julia V. Ponomarenko, Galina V. Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, and Mikhail P. Ponomarenko
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
Nucl. Acids Res. 2002 30: 195-199; doi:10.1093/nar/30.1.195 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, and Nikolay A. Kolchanov
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
Nucl. Acids Res. 2002 30: 200-202; doi:10.1093/nar/30.1.200 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Kenji Onodera and Ulrich Melcher
VirOligo: a database of virus-specific oligonucleotides
Nucl. Acids Res. 2002 30: 203-204; doi:10.1093/nar/30.1.203 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Paces, Adam Pavlícek, and Václav Paces
HERVd: database of human endogenous retroviruses
Nucl. Acids Res. 2002 30: 205-206; doi:10.1093/nar/30.1.205 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Ron Edgar, Michael Domrachev, and Alex E. Lash
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Nucl. Acids Res. 2002 30: 207-210; doi:10.1093/nar/30.1.207 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hidemasa Bono, Takeya Kasukawa, Yoshihide Hayashizaki, and Yasushi Okazaki
READ: RIKEN Expression Array Database
Nucl. Acids Res. 2002 30: 211-213; doi:10.1093/nar/30.1.211 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter M. Haverty, Zhiping Weng, Nathan L. Best, Kenneth R. Auerbach, Li-Li Hsiao, Roderick V. Jensen, and Steven R. Gullans
HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues
Nucl. Acids Res. 2002 30: 214-217; doi:10.1093/nar/30.1.214 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter S. Nelson, Colin Pritchard, Denise Abbott, and Nigel Clegg
The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
Nucl. Acids Res. 2002 30: 218-220; doi:10.1093/nar/30.1.218 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, and Shinichi Morishita
The Gene Resource Locator: gene locus maps for transcriptome analysis
Nucl. Acids Res. 2002 30: 221-225; doi:10.1093/nar/30.1.221 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian Schönbach, Judice L. Y. Koh, Darren R. Flower, Limsoon Wong, and Vladimir Brusic
FIMM, a database of functional molecular immunology: update 2002
Nucl. Acids Res. 2002 30: 226-229; doi:10.1093/nar/30.1.226 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jean-Marie Buerstedde, Hiroshi Arakawa, Akira Watahiki, Piere Piero Carninci, Y. Yoshihide Hayashizaki, Bernhard Korn, and Jiri Plachy
The DT40 web site: sampling and connecting the genes of a B cell line
Nucl. Acids Res. 2002 30: 230-231; doi:10.1093/nar/30.1.230 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jouni Väliaho, Marianne Pusa, Tuomo Ylinen, and Mauno Vihinen
IDR: the ImmunoDeficiency Resource
Nucl. Acids Res. 2002 30: 232-234; doi:10.1093/nar/30.1.232 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, and Amos Bairoch
The PROSITE database, its status in 2002
Nucl. Acids Res. 2002 30: 235-238; doi:10.1093/nar/30.1.235 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T. K. Attwood, M. J. Blythe, D. R. Flower, A. Gaulton, J. E. Mabey, N. Maudling, L. McGregor, A. L. Mitchell, G. Moulton, K. Paine, and P. Scordis
PRINTS and PRINTS-S shed light on protein ancestry
Nucl. Acids Res. 2002 30: 239-241; doi:10.1093/nar/30.1.239 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, Tobias Doerks, Joerg Schultz, Richard Mott, Francesca Ciccarelli, Richard R. Copley, Chris P. Ponting, and Peer Bork
Recent improvements to the SMART domain-based sequence annotation resource
Nucl. Acids Res. 2002 30: 242-244; doi:10.1093/nar/30.1.242 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John Westbrook, Zukang Feng, Shri Jain, T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary L. Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne, and Helen M. Berman
The Protein Data Bank: unifying the archive
Nucl. Acids Res. 2002 30: 245-248; doi:10.1093/nar/30.1.245 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, and Stephen H. Bryant
MMDB: Entrez’s 3D-structure database
Nucl. Acids Res. 2002 30: 249-252; doi:10.1093/nar/30.1.249 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Reichert and Jürgen Sühnel
The IMB Jena Image Library of Biological Macromolecules: 2002 update
Nucl. Acids Res. 2002 30: 253-254; doi:10.1093/nar/30.1.253 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, and Andrej Sali
MODBASE, a database of annotated comparative protein structure models
Nucl. Acids Res. 2002 30: 255-259; doi:10.1093/nar/30.1.255 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John-Marc Chandonia, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, and Steven E. Brenner
ASTRAL compendium enhancements
Nucl. Acids Res. 2002 30: 260-263; doi:10.1093/nar/30.1.260 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, and Alexey G. Murzin
SCOP database in 2002: refinements accommodate structural genomics
Nucl. Acids Res. 2002 30: 264-267; doi:10.1093/nar/30.1.264 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julian Gough and Cyrus Chothia
SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
Nucl. Acids Res. 2002 30: 268-272; doi:10.1093/nar/30.1.268 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kristian Vlahovicek, János Murvai, Endre Barta, and Sándor Pongor
The SBASE protein domain library, release 9.0: an online resource for protein domain identification
Nucl. Acids Res. 2002 30: 273-275; doi:10.1093/nar/30.1.273 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alex Bateman, Ewan Birney, Lorenzo Cerruti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, and Erik L. L. Sonnhammer
The Pfam Protein Families Database
Nucl. Acids Res. 2002 30: 276-280; doi:10.1093/nar/30.1.276 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, and Stephen H. Bryant
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Nucl. Acids Res. 2002 30: 281-283; doi:10.1093/nar/30.1.281 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V. Mallika, Anirban Bhaduri, and R. Sowdhamini
PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies
Nucl. Acids Res. 2002 30: 284-288; doi:10.1093/nar/30.1.284 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, R. Sowdhamini, and N. Srinivasan
SUPFAM—a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes
Nucl. Acids Res. 2002 30: 289-293; doi:10.1093/nar/30.1.289 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, and Ken Nishikawa
GTOP: a database of protein structures predicted from genome sequences
Nucl. Acids Res. 2002 30: 294-298; doi:10.1093/nar/30.1.294 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antje Krause, Stefan A. Haas, Eivind Coward, and Martin Vingron
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein
Nucl. Acids Res. 2002 30: 299-300; doi:10.1093/nar/30.1.299 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, and Akinori Sarai
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0
Nucl. Acids Res. 2002 30: 301-302; doi:10.1093/nar/30.1.301 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ioannis Xenarios, Lukasz Salwínski, Xiaoqun Joyce Duan, Patrick Higney, Sul-Min Kim, and David Eisenberg
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
Nucl. Acids Res. 2002 30: 303-305; doi:10.1093/nar/30.1.303 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, and Charles DeLisi
Predictome: a database of putative functional links between proteins
Nucl. Acids Res. 2002 30: 306-309; doi:10.1093/nar/30.1.306 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Grant H. Jacobs, Oliver Rackham, Peter A. Stockwell, Warren Tate, and Chris M. Brown
Transterm: a database of mRNAs and translational control elements
Nucl. Acids Res. 2002 30: 310-311; doi:10.1093/nar/30.1.310 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N. A. Kolchanov, E. V. Ignatieva, E. A. Ananko, O. A. Podkolodnaya, I. L. Stepanenko, T. I. Merkulova, M. A. Pozdnyakov, N. L. Podkolodny, A. N. Naumochkin, and A. G. Romashchenko
Transcription Regulatory Regions Database (TRRD): its status in 2002
Nucl. Acids Res. 2002 30: 312-317; doi:10.1093/nar/30.1.312 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Raquel Tobes and Juan L. Ramos
AraC-XylS database: a family of positive transcriptional regulators in bacteria
Nucl. Acids Res. 2002 30: 318-321; doi:10.1093/nar/30.1.318 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Viviane Praz, Rouaïda Périer, Claude Bonnard, and Philipp Bucher
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data
Nucl. Acids Res. 2002 30: 322-324; doi:10.1093/nar/30.1.322 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, and Stephane Rombauts
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
Nucl. Acids Res. 2002 30: 325-327; doi:10.1093/nar/30.1.325 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yutaka Suzuki, Riu Yamashita, Kenta Nakai, and Sumio Sugano
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs
Nucl. Acids Res. 2002 30: 328-331; doi:10.1093/nar/30.1.328 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olga V. Kel-Margoulis, Alexander E. Kel, Ingmar Reuter, Igor V. Deineko, and Edgar Wingender
TRANSCompel®: a database on composite regulatory elements in eukaryotic genes
Nucl. Acids Res. 2002 30: 332-334; doi:10.1093/nar/30.1.332 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, and Cecilia Saccone
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002
Nucl. Acids Res. 2002 30: 335-340; doi:10.1093/nar/30.1.335 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Steven Sullivan, Daniel W. Sink, Kenneth L. Trout, Izabela Makalowska, Patrick M. Taylor, Andreas D. Baxevanis, and David Landsman
The Histone Database
Nucl. Acids Res. 2002 30: 341-342; doi:10.1093/nar/30.1.341 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Neil D. Rawlings, Emmet O’Brien, and Alan J. Barrett
MEROPS: the protease database
Nucl. Acids Res. 2002 30: 343-346; doi:10.1093/nar/30.1.343 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F. De Leo, M. Volpicella, F. Licciulli, S. Liuni, R. Gallerani, and L. R. Ceci
PLANT-PIs: a database for plant protease inhibitors and their genes
Nucl. Acids Res. 2002 30: 347-348; doi:10.1093/nar/30.1.347 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Natalia Maltsev, E. Marland, G. X. Yu, S. Bhatnagar, and R. Lusk
Sentra, a database of signal transduction proteins
Nucl. Acids Res. 2002 30: 349-350; doi:10.1093/nar/30.1.349 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Alexander V. Spirov, Mikhail Borovsky, and Olesya A. Spirova
HOX Pro DB: the functional genomics of hox ensembles
Nucl. Acids Res. 2002 30: 351-353; doi:10.1093/nar/30.1.351 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chiquito Crasto, Luis Marenco, Perry Miller, and Gordon Shepherd
Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences
Nucl. Acids Res. 2002 30: 354-360; doi:10.1093/nar/30.1.354 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Øyvind Edvardsen, Anne Lise Reiersen, Margot W. Beukers, and Kurt Kristiansen
tGRAP, the G-protein coupled receptors mutant database
Nucl. Acids Res. 2002 30: 361-363; doi:10.1093/nar/30.1.361 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jorge Duarte, Guy Perrière, Vincent Laudet, and Marc Robinson-Rechavi
NUREBASE: database of nuclear hormone receptors
Nucl. Acids Res. 2002 30: 364-368; doi:10.1093/nar/30.1.364 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tae-Kwon Sohn, Eun-Joung Moon, Seok-Ki Lee, Hwan-Gue Cho, and Kyu-Won Kim
AngioDB: database of angiogenesis and angiogenesis-related molecules
Nucl. Acids Res. 2002 30: 369-371; doi:10.1093/nar/30.1.369 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Ines Liebich, Jürgen Bode, Matthias Frisch, and Edgar Wingender
S/MARt DB: a database on scaffold/matrix attached regions
Nucl. Acids Res. 2002 30: 372-374; doi:10.1093/nar/30.1.372 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael H. W. Weber, Ingo Fricke, Niclas Doll, and Mohamed A. Marahiel
CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response
Nucl. Acids Res. 2002 30: 375-378; doi:10.1093/nar/30.1.375 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jesus M. Castagnetto, Sean W. Hennessy, Victoria A. Roberts, Elizabeth D. Getzoff, John A. Tainer, and Michael E. Pique
MDB: the Metalloprotein Database and Browser at The Scripps Research Institute
Nucl. Acids Res. 2002 30: 379-382; doi:10.1093/nar/30.1.379 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francine B. Perler
InBase: the Intein Database
Nucl. Acids R