Nucleic Acids Research

Articles:

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Nucl. Acids Res. 2002 30: 5015; doi:10.1093/nar/gkf700 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

May Al-Maghrebi, Hervé Brulé, Marina Padkina, Carrie Allen, W. Michael Holmes, and Zendra E. Zehner

The 3' untranslated region of human vimentin mRNA interacts with protein complexes containing eEF-1 and HAX-1
Nucl. Acids Res. 2002 30: 5017-5028; doi:10.1093/nar/gkf656 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mi-Sun Hwang, Young-Shin Kim, Na-Hyun Choi, Jae-Hong Park, Eun-Jin Oh, Eun-Jeong Kwon, Masamitsu Yamaguchi, and Mi-Ae Yoo

The Caudal homeodomain protein activates Drosophila E2F gene expression
Nucl. Acids Res. 2002 30: 5029-5035; doi:10.1093/nar/gkf640 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ritu Pandey, Andreas Müller, Carolyn A. Napoli, David A. Selinger, Craig S. Pikaard, Eric J. Richards, Judith Bender, David W. Mount, and Richard A. Jorgensen

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes
Nucl. Acids Res. 2002 30: 5036-5055; doi:10.1093/nar/gkf660 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

María I. Martínez-Jiménez, Pablo Mesa, and Juan C. Alonso

Bacillus subtilis subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P
Nucl. Acids Res. 2002 30: 5056-5064; doi:10.1093/nar/gkf650 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Milan Jovanovic, Ruth Sanchez, Sidney Altman, and Venkat Gopalan

Elucidation of structure–function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach
Nucl. Acids Res. 2002 30: 5065-5073; doi:10.1093/nar/gkf670 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Michal Minczuk, Jan Piwowarski, Monika A. Papworth, Karen Awiszus, Sarah Schalinski, Andrzej Dziembowski, Aleksandra Dmochowska, Ewa Bartnik, Kostas Tokatlidis, Piotr P. Stepien, and Peter Borowski

Localisation of the human hSuv3p helicase in the mitochondrial matrix and its preferential unwinding of dsDNA
Nucl. Acids Res. 2002 30: 5074-5086; doi:10.1093/nar/gkf647 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Holger Stephan, Frank Grosse, and Kent Søe

Human topoisomerase I cleavage complexes are repaired by a p53-stimulated recombination-like reaction in vitro
Nucl. Acids Res. 2002 30: 5087-5093; doi:10.1093/nar/gkf659 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dominic Dulude, Martin Baril, and Léa Brakier-Gingras

Characterization of the frameshift stimulatory signal controlling a programmed –1 ribosomal frameshift in the human immunodeficiency virus type 1
Nucl. Acids Res. 2002 30: 5094-5102; doi:10.1093/nar/gkf657 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A. Stein, Y. Dalal, and T. J. Fleury

Circle ligation of in vitro assembled chromatin indicates a highly flexible structure
Nucl. Acids Res. 2002 30: 5103-5109; doi:10.1093/nar/gkf671 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joseph Lee, Eun Hee Park, Graeme Couture, Isabelle Harvey, Philippe Garneau, and Jerry Pelletier

An upstream open reading frame impedes translation of the huntingtin gene
Nucl. Acids Res. 2002 30: 5110-5119; doi:10.1093/nar/gkf664 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Timothy Woods, Wei Wang, Erin Convery, Abdellatif Errami, Malgorzata Z. Zdzienicka, and Katheryn Meek

A single amino acid substitution in DNA-PKcs explains the novel phenotype of the CHO mutant, XR-C2
Nucl. Acids Res. 2002 30: 5120-5128; doi:10.1093/nar/gkf625 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chie Otsuka, Sachi Sanadai, Yasuhiro Hata, Hisanori Okuto, Vladimir N. Noskov, David Loakes, and Kazuo Negishi

Difference between deoxyribose- and tetrahydrofuran-type abasic sites in the in vivo mutagenic responses in yeast
Nucl. Acids Res. 2002 30: 5129-5135; doi:10.1093/nar/gkf666 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pierre-Antoine Defossez and Eric Gilson

The vertebrate protein CTCF functions as an insulator in Saccharomyces cerevisiae
Nucl. Acids Res. 2002 30: 5136-5141; doi:10.1093/nar/gkf629 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

René Assenberg, Anthony Weston, Don L. N. Cardy, and Keith R. Fox

Sequence-dependent folding of DNA three-way junctions
Nucl. Acids Res. 2002 30: 5142-5150; doi:10.1093/nar/gkf637 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hirohide Saito and Hiroaki Suga

Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme
Nucl. Acids Res. 2002 30: 5151-5159; doi:10.1093/nar/gkf641 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dwaine A. Braasch, Yinghui Liu, and David R. Corey

Antisense inhibition of gene expression in cells by oligonucleotides incorporating locked nucleic acids: effect of mRNA target sequence and chimera design
Nucl. Acids Res. 2002 30: 5160-5167; doi:10.1093/nar/gkf651 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Andrew Tsourkas, Mark A. Behlke, and Gang Bao

Hybridization of 2'-O-methyl and 2'-deoxy molecular beacons to RNA and DNA targets
Nucl. Acids Res. 2002 30: 5168-5174; doi:10.1093/nar/gkf635 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank Hartung, Frank R. Blattner, and Holger Puchta

Intron gain and loss in the evolution of the conserved eukaryotic recombination machinery
Nucl. Acids Res. 2002 30: 5175-5181; doi:10.1093/nar/gkf649 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kazuma Aoki, Yasuhiro Ishii, Ken Matsumoto, and Masafumi Tsujimoto

Methylation of Xenopus CIRP2 regulates its arginine- and glycine-rich region-mediated nucleocytoplasmic distribution
Nucl. Acids Res. 2002 30: 5182-5192; doi:10.1093/nar/gkf638 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Robert A. Kazmierczak, Brian M. Swalla, Alex B. Burgin, Richard I. Gumport, and Jeffrey F. Gardner

Regulation of site-specific recombination by the C-terminus of integrase
Nucl. Acids Res. 2002 30: 5193-5204; doi:10.1093/nar/gkf652 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yasushi Saitoh, Satoru Miyagi, Hiroyoshi Ariga, and Ken-ichi Tsutsumi

Functional domains involved in the interaction between Orc1 and transcriptional repressor AlF-C that bind to an origin/promoter of the rat aldolase B gene
Nucl. Acids Res. 2002 30: 5205-5212; doi:10.1093/nar/gkf642 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jinghui Zhang, William L. Rowe, Jeffery P. Struewing, and Kenneth H. Buetow

HapScope: a software system for automated and visual analysis of functionally annotated haplotypes
Nucl. Acids Res. 2002 30: 5213-5221; doi:10.1093/nar/gkf654 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marine Escaffre, Jean-Claude Chottard, and Sophie Bombard

Rearrangement of a 1,3-trans-{Pt(NH₃)₂[(GXG)-N7G,N7G]} intrastrand cross-link into interstrand cross-links within RNA duplexes
Nucl. Acids Res. 2002 30: 5222-5228; doi:10.1093/nar/gkf672 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Raja Mazumder, Lakshminarayan M. Iyer, Sona Vasudevan, and L. Aravind

Detection of novel members, structure–function analysis and evolutionary classification of the 2H phosphoesterase superfamily
Nucl. Acids Res. 2002 30: 5229-5243; doi:10.1093/nar/gkf645 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jun Aishima, Rossitza K. Gitti, Joyce E. Noah, Hin Hark Gan, Tamar Schlick, and Cynthia Wolberger

A Hoogsteen base pair embedded in undistorted B-DNA
Nucl. Acids Res. 2002 30: 5244-5252; doi:10.1093/nar/gkf661 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tomoko Sunami, Jiro Kondo, Tomonori Kobuna, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura, and Akio Takénaka

Crystal structure of d(GCGAAAGCT) containing a parallel-stranded duplex with homo base pairs and an anti-parallel duplex with Watson–Crick base pairs
Nucl. Acids Res. 2002 30: 5253-5260; doi:10.1093/nar/gkf639 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tulasiram Prathapam, Christian Kühne, and Lawrence Banks

Skip interacts with the retinoblastoma tumor suppressor and inhibits its transcriptional repression activity
Nucl. Acids Res. 2002 30: 5261-5268; doi:10.1093/nar/gkf658 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jacob B. Tuite, Jerome C. Shiels, and Anne M. Baranger

Substitution of an essential adenine in the U1A–RNA complex with a non-polar isostere
Nucl. Acids Res. 2002 30: 5269-5275; doi:10.1093/nar/gkf636 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sébastien Lyonnais, Candide Hounsou, Marie-Paule Teulade-Fichou, Josette Jeusset, Eric Le Cam, and Gilles Mirambeau

G-quartets assembly within a G-rich DNA flap. A possible event at the center of the HIV-1 genome
Nucl. Acids Res. 2002 30: 5276-5283; doi:10.1093/nar/gkf644 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ekaterina G. Frank, Jane M. Sayer, Heiko Kroth, Eiji Ohashi, Haruo Ohmori, Donald M. Jerina, and Roger Woodgate

Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase
Nucl. Acids Res. 2002 30: 5284-5292; doi:10.1093/nar/gkf643 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuko Sasaki, Jun Ishikawa, Atsushi Yamashita, Kenshiro Oshima, Tsuyoshi Kenri, Keiko Furuya, Chie Yoshino, Atsuko Horino, Tadayoshi Shiba, Tsuguo Sasaki, and Masahira Hattori

The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans
Nucl. Acids Res. 2002 30: 5293-5300; doi:10.1093/nar/gkf667 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Gaute Brede, Jorun Solheim, and Hans Prydz

PSKH1, a novel splice factor compartment-associated serine kinase
Nucl. Acids Res. 2002 30: 5301-5309; doi:10.1093/nar/gkf648 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gary B. Fogel, V. William Porto, Dana G. Weekes, David B. Fogel, Richard H. Griffey, John A. McNeil, Elena Lesnik, David J. Ecker, and Rangarajan Sampath

Discovery of RNA structural elements using evolutionary computation
Nucl. Acids Res. 2002 30: 5310-5317; doi:10.1093/nar/gkf653 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Ciaran Morrison, Alexander J. Henzing, Ole Nørregaard Jensen, Neil Osheroff, Helen Dodson, Stefanie E. Kandels-Lewis, Richard R. Adams, and William C. Earnshaw

Proteomic analysis of human metaphase chromosomes reveals topoisomerase II alpha as an Aurora B substrate
Nucl. Acids Res. 2002 30: 5318-5327; doi:10.1093/nar/gkf665 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter M. Gannett, Eva Darian, Jeannine Powell, Edward M. Johnson Il, Claudius Mundoma, Nancy L. Greenbaum, Chris M. Ramsey, Naresh S. Dalal, and David E. Budil

Probing triplex formation by EPR spectroscopy using a newly synthesized spin label for oligonucleotides
Nucl. Acids Res. 2002 30: 5328-5337; doi:10.1093/nar/gkf634 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Erwin Ilegems, Horst M. Pick, and Horst Vogel

Monitoring mis-acylated tRNA suppression efficiency in mammalian cells via EGFP fluorescence recovery
Nucl. Acids Res. 2002 30: e128; doi:10.1093/nar/gnf128 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. J. Hayden, G. Good, and P. J. Sharp

Sequence tagged microsatellite profiling (STMP): improved isolation of DNA sequence flanking target SSRs
Nucl. Acids Res. 2002 30: e129; doi:10.1093/nar/gnf129 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P. Kumar, G. Dhawan, R. Chandra, and K. C. Gupta

Polyamine-assisted rapid and clean cleavage of oligonucleotides from cis-diol bearing universal support
Nucl. Acids Res. 2002 30: e130; doi:10.1093/nar/gnf130 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anton Yuryev, JianPing Huang, Mark Pohl, Robert Patch, Felicia Watson, Peter Bell, Miriam Donaldson, Michael S. Phillips, and Michael T. Boyce-Jacino

Predicting the success of primer extension genotyping assays using statistical modeling
Nucl. Acids Res. 2002 30: e131; doi:10.1093/nar/gnf131 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xianbin Yang, Suzanne E. Bassett, Xin Li, Bruce A. Luxon, Norbert K. Herzog, Robert E. Shope, Judy Aronson, Tarl W. Prow, James F. Leary, Romy Kirby, Andrew D. Ellington, and David G. Gorenstein

Construction and selection of bead-bound combinatorial oligonucleoside phosphorothioate and phosphorodithioate aptamer libraries designed for rapid PCR-based sequencing
Nucl. Acids Res. 2002 30: e132; doi:10.1093/nar/gnf132 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ola Larsson, Dorit Thormeyer, Arian Asinger, Björn Wihlén, Claes Wahlestedt, and Zicai Liang

Quantitative codon optimisation of DNA libraries encoding sub-random peptides: design and characterisation of a novel library encoding transmembrane domain peptides
Nucl. Acids Res. 2002 30: e133; doi:10.1093/nar/gnf133 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kai Schönig, Frieder Schwenk, Klaus Rajewsky, and Hermann Bujard

Stringent doxycycline dependent control of CRE recombinase in vivo
Nucl. Acids Res. 2002 30: e134; doi:10.1093/nar/gnf134 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jonas Mengel-Jørgensen and Finn Kirpekar

Detection of pseudouridine and other modifications in tRNA by cyanoethylation and MALDI mass spectrometry
Nucl. Acids Res. 2002 30: e135; doi:10.1093/nar/gnf135 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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