Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image
[Cover Caption]
Other Issues:
Previous Next 		Contents: Volume 31, Number 1    January 1 2003    [Index by Author] 
      Down Editorial
      Down Articles
 

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Editorial:Back

Editorial
Nucl. Acids Res. 2003 31: 0; doi:10.1093/nar/gkg173 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:Back

Andreas D. Baxevanis
The Molecular Biology Database Collection: 2003 update
Nucl. Acids Res. 2003 31: 1-12; doi:10.1093/nar/gkg120 [Abstract] [FREE Full Text] [Print PDF] [Database Listing] [Request Permissions]  

S. Miyazaki, H. Sugawara, T. Gojobori, and Y. Tateno
DNA Data Bank of Japan (DDBJ) in XML
Nucl. Acids Res. 2003 31: 13-16; doi:10.1093/nar/gkg088 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Francesco Nardone, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, and Robert Vaughan
The EMBL Nucleotide Sequence Database: major new developments
Nucl. Acids Res. 2003 31: 17-22; doi:10.1093/nar/gkg021 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and David L. Wheeler
GenBank
Nucl. Acids Res. 2003 31: 23-27; doi:10.1093/nar/gkg057 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David L. Wheeler, Deanna M. Church, Scott Federhen, Alex E. Lash, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tatiana A. Tatusova, and Lukas Wagner
Database resources of the National Center for Biotechnology
Nucl. Acids Res. 2003 31: 28-33; doi:10.1093/nar/gkg033 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kim D. Pruitt, Tatiana Tatusova, and Donna R. Maglott
NCBI Reference Sequence Project: update and current status
Nucl. Acids Res. 2003 31: 34-37; doi:10.1093/nar/gkg111 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Clamp, D. Andrews, D. Barker, P. Bevan, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, T. Hubbard, A. Kasprzyk, D. Keefe, H. Lehvaslaiho, V. Iyer, C. Melsopp, E. Mongin, R. Pettett, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, and E. Birney
Ensembl 2002: accommodating comparative genomics
Nucl. Acids Res. 2003 31: 38-42; doi:10.1093/nar/gkg083 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola Mulder, Claire O'Donovan, Helen Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, and Graham Cameron
The European Bioinformatics Institute's data resources
Nucl. Acids Res. 2003 31: 43-50; doi:10.1093/nar/gkg066 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D. Karolchik, R. Baertsch, M. Diekhans, T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, and W. J. Kent
The UCSC Genome Browser Database
Nucl. Acids Res. 2003 31: 51-54; doi:10.1093/nar/gkg129 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C. Dieterich, H. Wang, K. Rateitschak, H. Luz, and M. Vingron
CORG: a database for COmparative Regulatory Genomics
Nucl. Acids Res. 2003 31: 55-57; doi:10.1093/nar/gkg007 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ikuo Uchiyama
MBGD: microbial genome database for comparative analysis
Nucl. Acids Res. 2003 31: 58-62; doi:10.1093/nar/gkg109 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Magalie Leveugle, Karine Prat, Nadine Perrier, Daniel Birnbaum, and François Coulier
ParaDB: a tool for paralogy mapping in vertebrate genomes
Nucl. Acids Res. 2003 31: 63-67; doi:10.1093/nar/gkg106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, and Susanna-Assunta Sansone
ArrayExpress—a public repository for microarray gene expression data at the EBI
Nucl. Acids Res. 2003 31: 68-71; doi:10.1093/nar/gkg091 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thorsten Henrich, Mirana Ramialison, Rebecca Quiring, Beate Wittbrodt, Makoto Furutani-Seiki, Joachim Wittbrodt, and Hisato Kondoh
MEPD: a Medaka gene expression pattern database
Nucl. Acids Res. 2003 31: 72-74; doi:10.1093/nar/gkg017 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Céline Amoreira, Winfried Hindermann, and Christoph Grunau
An improved version of the DNA methylation database (MethDB)
Nucl. Acids Res. 2003 31: 75-77; doi:10.1093/nar/gkg093 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kevin Roberg-Perez, Corey M. Carlson, and David A. Largaespada
MTID: a database of Sleeping Beauty transposon insertions in mice
Nucl. Acids Res. 2003 31: 78-81; doi:10.1093/nar/gkg045 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, and Michael A. Siani-Rose
NetAffx: Affymetrix probesets and annotations
Nucl. Acids Res. 2003 31: 82-86; doi:10.1093/nar/gkg121 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, and John F. Atkins
RECODE 2003
Nucl. Acids Res. 2003 31: 87-89; doi:10.1093/nar/gkg024 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Iris Tzafrir, Allan Dickerman, Olga Brazhnik, Quoc Nguyen, John McElver, Catherine Frye, David Patton, and David Meinke
The Arabidopsis SeedGenes Project
Nucl. Acids Res. 2003 31: 90-93; doi:10.1093/nar/gkg028 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, and Gavin Sherlock
The Stanford Microarray Database: data access and quality assessment tools
Nucl. Acids Res. 2003 31: 94-96; doi:10.1093/nar/gkg078 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mathias Krull, Nico Voss, Claudia Choi, Susanne Pistor, Anatolij Potapov, and Edgar Wingender
TRANSPATH®: an integrated database on signal transduction and a tool for array analysis
Nucl. Acids Res. 2003 31: 97-100; doi:10.1093/nar/gkg089 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christopher Lee, Levan Atanelov, Barmak Modrek, and Yi Xing
ASAP: the Alternative Splicing Annotation Project
Nucl. Acids Res. 2003 31: 101-105; doi:10.1093/nar/gkg029 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vattipally B. Sreenu, Vishwanath Alevoor, Javaregowda Nagaraju, and Hampapathalu A. Nagarajaram
MICdb: database of prokaryotic microsatellites
Nucl. Acids Res. 2003 31: 106-108; doi:10.1093/nar/gkg002 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

William C. Ray and Charles J. Daniels
PACRAT: a database and analysis system for archaeal and bacterial intergenic sequence features
Nucl. Acids Res. 2003 31: 109-113; doi:10.1093/nar/gkg013 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ilham A. Shahmuradov, Alex J. Gammerman, John M. Hancock, Peter M. Bramley, and Victor V. Solovyev
PlantProm: a database of plant promoter sequences
Nucl. Acids Res. 2003 31: 114-117; doi:10.1093/nar/gkg041 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julia V. Ponomarenko, Tatyana I. Merkulova, Galina V. Orlova, Oleg N. Fokin, Elena V. Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, and Mikhail P. Ponomarenko
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation
Nucl. Acids Res. 2003 31: 118-121; doi:10.1093/nar/gkg112 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Filip Pattyn, Frank Speleman, Anne De Paepe, and Jo Vandesompele
RTPrimerDB: the Real-Time PCR primer and probe database
Nucl. Acids Res. 2003 31: 122-123; doi:10.1093/nar/gkg011 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gudmundur A. Thorisson and Lincoln D. Stein
The SNP Consortium website: past, present and future
Nucl. Acids Res. 2003 31: 124-127; doi:10.1093/nar/gkg052 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stephen Rudd, Hans-Werner Mewes, and Klaus F.X. Mayer
Sputnik: a database platform for comparative plant genomics
Nucl. Acids Res. 2003 31: 128-132; doi:10.1093/nar/gkg075 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Todd W. Harris, Raymond Lee, Erich Schwarz, Keith Bradnam, Daniel Lawson, Wen Chen, Darin Blasier, Eimear Kenny, Fiona Cunningham, Ranjana Kishore, Juancarlos Chan, Hans-Michael Muller, Andrei Petcherski, Gudmundur Thorisson, Allen Day, Tamberlyn Bieri, Anthony Rogers, Chao-Kung Chen, John Spieth, Paul Sternberg, Richard Durbin, and Lincoln D. Stein
WormBase: a cross-species database for comparative genomics
Nucl. Acids Res. 2003 31: 133-137; doi:10.1093/nar/gkg053 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Emmanuelle Karsenty, Emmanuel Barillot, Gwenola Tosser-Klopp, Yvette Lahbib-Mansais, Denis Milan, François Hatey, Susanna Cirera, Milena Sawera, Claus B. Jørgensen, Bhanu Chowdhary, Merete Fredholm, Klaus Wimmers, Siriluck Ponsuksili, Roberta Davoli, Luca Fontanesi, Silvia Braglia, Paolo Zambonelli, Daniele Bigi, Stefan Neuenschwander, and Joël Gellin
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa)
Nucl. Acids Res. 2003 31: 138-141; doi:10.1093/nar/gkg061 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marilyn Safran, Vered Chalifa-Caspi, Orit Shmueli, Tsviya Olender, Michal Lapidot, Naomi Rosen, Michael Shmoish, Yakov Peter, Gustavo Glusman, Ester Feldmesser, Avital Adato, Inga Peter, Miriam Khen, Tal Atarot, Yoram Groner, and Doron Lancet
Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE
Nucl. Acids Res. 2003 31: 142-146; doi:10.1093/nar/gkg050 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael Gilson, Bryan Biehl, Frederick R. Blattner, and Nicole T. Perna
ASAP, a systematic annotation package for community analysis of genomes
Nucl. Acids Res. 2003 31: 147-151; doi:10.1093/nar/gkg125 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John W. Urbance, James Cole, Paul Saxman, and James M. Tiedje
BSD: the Biodegradative Strain Database
Nucl. Acids Res. 2003 31: 152-155; doi:10.1093/nar/gkg032 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mark L. Crowe, Carine Serizet, Vincent Thareau, Sébastien Aubourg, Pierre Rouzé, Pierre Hilson, Jim Beynon, Peter Weisbeek, Paul van Hummelen, Philippe Reymond, Javier Paz-Ares, Wilfried Nietfeld, and Martin Trick
CATMA: a complete Arabidopsis GST database
Nucl. Acids Res. 2003 31: 156-158; doi:10.1093/nar/gkg071 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joseph F. Ryan and John R. Finnerty
CnidBase: The Cnidarian Evolutionary Genomics Database
Nucl. Acids Res. 2003 31: 159-163; doi:10.1093/nar/gkg116 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ross Overbeek, Niels Larsen, Theresa Walunas, Mark D'Souza, Gordon Pusch, Eugene Selkov, Jr, Konstantinos Liolios, Viktor Joukov, Denis Kaznadzey, Iain Anderson, Anamitra Bhattacharyya, Henry Burd, Warren Gardner, Paul Hanke, Vinayak Kapatral, Natalia Mikhailova, Olga Vasieva, Andrei Osterman, Veronika Vonstein, Michael Fonstein, Natalia Ivanova, and Nikos Kyrpides
The ERGOTM genome analysis and discovery system
Nucl. Acids Res. 2003 31: 164-171; doi:10.1093/nar/gkg148 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

The FlyBase database of the Drosophila genome projects and community literature
Nucl. Acids Res. 2003 31: 172-175; doi:10.1093/nar/gkg094 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Emmet A. O'Brien, Elarbi Badidi, Ania Barbasiewicz, Cristina deSousa, B. Franz Lang, and Gertraud Burger
GOBASE—a database of mitochondrial and chloroplast information
Nucl. Acids Res. 2003 31: 176-178; doi:10.1093/nar/gkg090 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Delphine Samson, Fabrice Legeai, Emmanuelle Karsenty, Sébastien Reboux, Jean-Baptiste Veyrieras, Jeremy Just, and Emmanuel Barillot
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics
Nucl. Acids Res. 2003 31: 179-182; doi:10.1093/nar/gkg060 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David E. Matthews, Victoria L. Carollo, Gerard R. Lazo, and Olin D. Anderson
GrainGenes, the genome database for small-grain crops
Nucl. Acids Res. 2003 31: 183-186; doi:10.1093/nar/gkg058 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

S. Garcia-Vallve, E. Guzman, M. A. Montero, and A. Romeu
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes
Nucl. Acids Res. 2003 31: 187-189; doi:10.1093/nar/gkg004 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wojciech M. Karlowski, Heiko Schoof, Vijayalakshmi Janakiraman, Volker Stuempflen, and Klaus F. X. Mayer
MOsDB: an integrated information resource for rice genomics
Nucl. Acids Res. 2003 31: 190-192; doi:10.1093/nar/gkg073 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Judith A. Blake, Joel E. Richardson, Carol J. Bult, Jim A. Kadin, and Janan T. Eppig
MGD: the Mouse Genome Database
Nucl. Acids Res. 2003 31: 193-195; doi:10.1093/nar/gkg047 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Anne-Françoise J. Lamblin, John A. Crow, James E. Johnson, Kevin A. T. Silverstein, Timothy M. Kunau, Alan Kilian, Diane Benz, Martina Stromvik, Gabriella Endré, Kathryn A. VandenBosch, Douglas R. Cook, Nevin D. Young, and Ernest F. Retzel
MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome
Nucl. Acids Res. 2003 31: 196-201; doi:10.1093/nar/gkg119 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Daniel Jameson, Andrew P. Gibson, Cendrine Hudelot, and Paul G. Higgs
OGRe: a relational database for comparative analysis of mitochondrial genomes
Nucl. Acids Res. 2003 31: 202-206; doi:10.1093/nar/gkg077 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, and Hans-Werner Mewes
The PEDANT genome database
Nucl. Acids Res. 2003 31: 207-211; doi:10.1093/nar/gkg005 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Amit Bahl, Brian Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert, Jr, and Patricia Whetzel
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data
Nucl. Acids Res. 2003 31: 212-215; doi:10.1093/nar/gkg081 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shuai Weng, Qing Dong, Rama Balakrishnan, Karen Christie, Maria Costanzo, Kara Dolinski, Selina S. Dwight, Stacia Engel, Dianna G. Fisk, Eurie Hong, Laurie Issel-Tarver, Anand Sethuraman, Chandra Theesfeld, Rey Andrada, Gail Binkley, Christopher Lane, Mark Schroeder, David Botstein, and J. Michael Cherry
Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins
Nucl. Acids Res. 2003 31: 216-218; doi:10.1093/nar/gkg054 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, and Ash A. Alizadeh
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Nucl. Acids Res. 2003 31: 219-223; doi:10.1093/nar/gkg014 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Seung Yon Rhee, William Beavis, Tanya Z. Berardini, Guanghong Chen, David Dixon, Aisling Doyle, Margarita Garcia-Hernandez, Eva Huala, Gabriel Lander, Mary Montoya, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Julie Tacklind, Dan C. Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, and Peifen Zhang
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
Nucl. Acids Res. 2003 31: 224-228; doi:10.1093/nar/gkg076 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qiaoping Yuan, Shu Ouyang, Jia Liu, Bernard Suh, Foo Cheung, Razvan Sultana, Dan Lee, John Quackenbush, and C. Robin Buell
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists
Nucl. Acids Res. 2003 31: 229-233; doi:10.1093/nar/gkg059 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jessica C. Kissinger, Bindu Gajria, Li Li, Ian T. Paulsen, and David S. Roos
ToxoDB: accessing the Toxoplasma gondii genome
Nucl. Acids Res. 2003 31: 234-236; doi:10.1093/nar/gkg072 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Philippe Vaglio, Philippe Lamesch, Jérôme Reboul, Jean-François Rual, Monica Martinez, David Hill, and Marc Vidal
WorfDB: the Caenorhabditis elegans ORFeome Database
Nucl. Acids Res. 2003 31: 237-240; doi:10.1093/nar/gkg092 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Judy Sprague, Dave Clements, Tom Conlin, Pat Edwards, Ken Frazer, Kevin Schaper, Erik Segerdell, Peiran Song, Brock Sprunger, and Monte Westerfield
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
Nucl. Acids Res. 2003 31: 241-243; doi:10.1093/nar/gkg027 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qunfeng Dong, Laura Roy, Michael Freeling, Virginia Walbot, and Volker Brendel
ZmDB, an integrated database for maize genome research
Nucl. Acids Res. 2003 31: 244-247; doi:10.1093/nar/gkg082 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gary D. Bader, Doron Betel, and Christopher W. V. Hogue
BIND: the Biomolecular Interaction Network Database
Nucl. Acids Res. 2003 31: 248-250; doi:10.1093/nar/gkg056 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

See-Kiong Ng, Zhuo Zhang, Soon-Heng Tan, and Kui Lin
InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes
Nucl. Acids Res. 2003 31: 251-254; doi:10.1093/nar/gkg079 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Z. L. Ji, X. Chen, C. J. Zhen, L. X. Yao, L. Y. Han, W. K. Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, and Y. Z. Chen
KDBI: Kinetic Data of Bio-molecular Interactions database
Nucl. Acids Res. 2003 31: 255-257; doi:10.1093/nar/gkg067 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian von Mering, Martijn Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, and Berend Snel
STRING: a database of predicted functional associations between proteins
Nucl. Acids Res. 2003 31: 258-261; doi:10.1093/nar/gkg034 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lynda B. M. Ellis, Bo Kyeng Hou, Wenjun Kang, and Lawrence P. Wackett
The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining
Nucl. Acids Res. 2003 31: 262-265; doi:10.1093/nar/gkg048 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard Münch, Karsten Hiller, Heiko Barg, Dana Heldt, Simone Linz, Edgar Wingender, and Dieter Jahn
PRODORIC: prokaryotic database of gene regulation
Nucl. Acids Res. 2003 31: 266-269; doi:10.1093/nar/gkg037 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H. Rajeevan, M. V. Osier, K.-H. Cheung, H. Deng, L. Druskin, R. Heinzen, J. R. Kidd, S. Stein, A. J. Pakstis, N. P. Tosches, C.-C. Yeh, P. L. Miller, and K. K. Kidd
ALFRED: the ALelle FREquency Database. Update
Nucl. Acids Res. 2003 31: 270-271; doi:10.1093/nar/gkg043 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jean-Loup Huret, Philippe Dessen, and Alain Bernheim
Atlas of Genetics and Cytogenetics in Oncology and Haematology, year 2003
Nucl. Acids Res. 2003 31: 272-274; doi:10.1093/nar/gkg126 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank W. Nicholas
Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals
Nucl. Acids Res. 2003 31: 275-277; doi:10.1093/nar/gkg074 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Doug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L'Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, and Thomas E. Ferrin
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells
Nucl. Acids Res. 2003 31: 278-281; doi:10.1093/nar/gkg064 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cyril Sarrauste de Menthière, Stéphane Terrière, Denis Pugnère, Manuel Ruiz, Jacques Demaille, and Isabelle Touitou
INFEVERS: the Registry for FMF and hereditary inflammatory disorders mutations
Nucl. Acids Res. 2003 31: 282-285; doi:10.1093/nar/gkg031 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Denis Pugnère, Manuel Ruiz, Cyril Sarrauste de Menthière, Benjamin Masdoua, Jacques Demaille, and Isabelle Touitou
The MetaFMF website: a high quality tool for meta-analysis of FMF
Nucl. Acids Res. 2003 31: 286-290; doi:10.1093/nar/gkg097 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Long-Cheng Li, Hong Zhao, Hiroaki Shiina, Christopher J. Kane, and Rajvir Dahiya
PGDB: a curated and integrated database of genes related to the prostate
Nucl. Acids Res. 2003 31: 291-293; doi:10.1093/nar/gkg008 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Florence Horn, Emmanuel Bettler, Laerte Oliveira, Fabien Campagne, Fred E. Cohen, and Gerrit Vriend
GPCRDB information system for G protein-coupled receptors
Nucl. Acids Res. 2003 31: 294-297; doi:10.1093/nar/gkg103 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Soo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, and Robert W. Shafer
Human immunodeficiency virus reverse transcriptase and protease sequence database
Nucl. Acids Res. 2003 31: 298-303; doi:10.1093/nar/gkg100 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sharmila Banerjee-Basu, Travis Moreland, Benjamin J. Hsu, Kenneth L. Trout, and Andreas D. Baxevanis
The Homeodomain Resource: 2003 update
Nucl. Acids Res. 2003 31: 304-306; doi:10.1093/nar/gkg118 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marie-Paule Lefranc
IMGT, the international ImMunoGeneTics database®
Nucl. Acids Res. 2003 31: 307-310; doi:10.1093/nar/gkg085 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James Robinson, Matthew J. Waller, Peter Parham, Natasja de Groot, Ronald Bontrop, Lorna J. Kennedy, Peter Stoehr, and Steven G. E. Marsh
IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex
Nucl. Acids Res. 2003 31: 311-314; doi:10.1093/nar/gkg070 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Phillip Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, and Evgueni M. Zdobnov
The InterPro Database, 2003 brings increased coverage and new features
Nucl. Acids Res. 2003 31: 315-318; doi:10.1093/nar/gkg046 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Markus Fischer and Jürgen Pleiss
The Lipase Engineering Database: a navigation and analysis tool for protein families
Nucl. Acids Res. 2003 31: 319-321; doi:10.1093/nar/gkg015 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marco Sardiello, Flavio Licciulli, Domenico Catalano, Marcella Attimonelli, and Corrado Caggese
MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion
Nucl. Acids Res. 2003 31: 322-324; doi:10.1093/nar/gkg123 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ryan Lister, Monika W. Murcha, and James Whelan
The Mitochondrial Protein Import Machinery of Plants (MPIMP) database
Nucl. Acids Res. 2003 31: 325-327; doi:10.1093/nar/gkg055 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. Dellaire, R. Farrall, and W.A. Bickmore
The Nuclear Protein Database (NPD): sub-nuclear localisation and functional annotation of the nuclear proteome
Nucl. Acids Res. 2003 31: 328-330; doi:10.1093/nar/gkg018 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joost J. J. van Durme, Emmanuel Bettler, Simon Folkertsma, Florence Horn, and Gert Vriend
NRMD: Nuclear Receptor Mutation Database
Nucl. Acids Res. 2003 31: 331-333; doi:10.1093/nar/gkg122 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul D. Thomas, Anish Kejariwal, Michael J. Campbell, Huaiyu Mi, Karen Diemer, Nan Guo, Istvan Ladunga, Betty Ulitsky-Lazareva, Anushya Muruganujan, Steven Rabkin, Jody A. Vandergriff, and Olivier Doremieux
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
Nucl. Acids Res. 2003 31: 334-341; doi:10.1093/nar/gkg115 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, and Michael Gribskov
The PlantsP and PlantsT Functional Genomics Databases
Nucl. Acids Res. 2003 31: 342-344; doi:10.1093/nar/gkg025 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhangzhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C.R. Vinayaka, Jian Zhang, and Winona C. Barker
The Protein Information Resource
Nucl. Acids Res. 2003 31: 345-347; doi:10.1093/nar/gkg040 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ori Sasson, Avishay Vaaknin, Hillel Fleischer, Elon Portugaly, Yonatan Bilu, Nathan Linial, and Michal Linial
ProtoNet: hierarchical classification of the protein space
Nucl. Acids Res. 2003 31: 348-352; doi:10.1093/nar/gkg096 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julien Grassot, Guy Mouchiroud, and Guy Perrière
RTKdb: database of receptor tyrosine kinase
Nucl. Acids Res. 2003 31: 353-358; doi:10.1093/nar/gkg036 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ovidiu Ivanciuc, Catherine H. Schein, and Werner Braun
SDAP: database and computational tools for allergenic proteins
Nucl. Acids Res. 2003 31: 359-362; doi:10.1093/nar/gkg010 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Magnus Alm Rosenblad, Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, and Tore Samuelsson
SRPDB: Signal Recognition Particle Database
Nucl. Acids Res. 2003 31: 363-364; doi:10.1093/nar/gkg107 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria J. Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, and Michel Schneider
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
Nucl. Acids Res. 2003 31: 365-370; doi:10.1093/nar/gkg095 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Daniel H. Haft, Jeremy D. Selengut, and Owen White
The TIGRFAMs database of protein families
Nucl. Acids Res. 2003 31: 371-373; doi:10.1093/nar/gkg128 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V. Matys, E. Fricke, R. Geffers, E. Gößling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A. E. Kel, O. V. Kel-Margoulis, D.-U. Kloos, S. Land, B. Lewicki-Potapov, H. Michael, R. Münch, I. Reuter, S. Rotert, H. Saxel, M. Scheer, S. Thiele, and E. Wingender
TRANSFAC®: transcriptional regulation, from patterns to profiles
Nucl. Acids Res. 2003 31: 374-378; doi:10.1093/nar/gkg108 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angelo M. Facchiano, Antonio Facchiano, and Francesco Facchiano
Active Sequences Collection (ASC) database: a new tool to assign functions to protein sequences
Nucl. Acids Res. 2003 31: 379-382; doi:10.1093/nar/gkg042 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, and Stephen H. Bryant
CDD: a curated Entrez database of conserved domain alignments
Nucl. Acids Res. 2003 31: 383-387; doi:10.1093/nar/gkg087 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E. V. Kriventseva, F. Servant, and R. Apweiler
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters
Nucl. Acids Res. 2003 31: 388-389; doi:10.1093/nar/gkg035 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hongzhan Huang, Winona C. Barker, Yongxing Chen, and Cathy H. Wu
iProClass: an integrated database of protein family, function and structure information
Nucl. Acids Res. 2003 31: 390-392; doi:10.1093/nar/gkg044 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tanja la Cour, Ramneek Gupta, Kristoffer Rapacki, Karen Skriver, Flemming M. Poulsen, and Søren Brunak
NESbase version 1.0: a database of nuclear export signals
Nucl. Acids Res. 2003 31: 393-396; doi:10.1093/nar/gkg101 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rajesh Nair, Phil Carter, and Burkhard Rost
NLSdb: database of nuclear localization signals
Nucl. Acids Res. 2003 31: 397-399; doi:10.1093/nar/gkg001 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T. K. Attwood, P. Bradley, D. R. Flower, A. Gaulton, N. Maudling, A. L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, and C. Zygouri
PRINTS and its automatic supplement, prePRINTS
Nucl. Acids Res. 2003 31: 400-402; doi:10.1093/nar/gkg030 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kristian Vlahovicek, Laszló Kaján, János Murvai, Zoltán Hegeds, and Sándor Pongor
The SBASE domain sequence library, release 10: domain architecture prediction
Nucl. Acids Res. 2003 31: 403-405; doi:10.1093/nar/gkg098 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masami Ikeda, Masafumi Arai, Toshikatsu Okuno, and Toshio Shimizu
TMPDB: a database of experimentally-characterized transmembrane topologies
Nucl. Acids Res. 2003 31: 406-409; doi:10.1093/nar/gkg020 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Phil Carter, Jinfeng Liu, and Burkhard Rost
PEP: Predictions for Entire Proteomes
Nucl. Acids Res. 2003 31: 410-413; doi:10.1093/nar/gkg102 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia Kriventseva, Virginie Mittard, Nicola Mulder, Isabelle Phan, Florence Servant, and Rolf Apweiler
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes
Nucl. Acids Res. 2003 31: 414-417; doi:10.1093/nar/gkg105 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard J. Roberts, Tamas Vincze, Janos Posfai, and Dana Macelis
REBASE: restriction enzymes and methyltransferases
Nucl. Acids Res. 2003 31: 418-42