Nucleic Acids Research

Articles:

Margarita I. Zarudnaya, Iryna M. Kolomiets, Andriy L. Potyahaylo, and Dmytro M. Hovorun

Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures
Nucl. Acids Res. 2003 31: 1375-1386; doi:10.1093/nar/gkg241 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Stefan Juranek, Hans-Joachim Wieden, and Hans J. Lipps

De novo cytosine methylation in the differentiating macronucleus of the stichotrichous ciliate Stylonychia lemnae
Nucl. Acids Res. 2003 31: 1387-1391; doi:10.1093/nar/gkg233 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Ke Shi, Baocheng Pan, and Muttaiya Sundaralingam

The crystal structure of an alternating RNA heptamer r(GUAUACA) forming a six base-paired duplex with 3'-end adenine overhangs
Nucl. Acids Res. 2003 31: 1392-1397; doi:10.1093/nar/gkg226 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takafusa Hikichi, Takashi Kohda, Tomoko Kaneko-Ishino, and Fumitoshi Ishino

Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites
Nucl. Acids Res. 2003 31: 1398-1406; doi:10.1093/nar/gkg232 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Young Geol Yoon and Michael D. Koob

Efficient cloning and engineering of entire mitochondrial genomes in Escherichia coli and transfer into transcriptionally active mitochondria
Nucl. Acids Res. 2003 31: 1407-1415; doi:10.1093/nar/gkg228 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Satoshi Sakamoto, Takashi Tamura, Takako Furukawa, Yasuo Komatsu, Eiko Ohtsuka, Masaya Kitamura, and Hideo Inoue

Highly efficient catalytic RNA cleavage by the cooperative action of two Cu(II) complexes embodied within an antisense oligonucleotide
Nucl. Acids Res. 2003 31: 1416-1425; doi:10.1093/nar/gkg238 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brigitte Scholz, Sabine Rechter, John C. Drach, Leroy B. Townsend, and Elke Bogner

Identification of the ATP-binding site in the terminase subunit pUL56 of human cytomegalovirus
Nucl. Acids Res. 2003 31: 1426-1433; doi:10.1093/nar/gkg229 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Emmanuel Giudice, Péter Várnai, and Richard Lavery

Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations
Nucl. Acids Res. 2003 31: 1434-1443; doi:10.1093/nar/gkg239 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jolanta Zaim and Andrzej M. Kierzek

The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer
Nucl. Acids Res. 2003 31: 1444-1454; doi:10.1093/nar/gkg234 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexandra Martins and Stewart Shuman

Mapping the triphosphatase active site of baculovirus mRNA capping enzyme LEF4 and evidence for a two-metal mechanism
Nucl. Acids Res. 2003 31: 1455-1463; doi:10.1093/nar/gkg244 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Claudia Temperini, Luigi Messori, Pierluigi Orioli, Cristina Di Bugno, Fabio Animati, and Giovanni Ughetto

The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes
Nucl. Acids Res. 2003 31: 1464-1469; doi:10.1093/nar/gkg245 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

V. C. Ogilvie, B. J. Wilson, S. M. Nicol, N. A. Morrice, L. R. Saunders, G. N. Barber, and F. V. Fuller-Pace

The highly related DEAD box RNA helicases p68 and p72 exist as heterodimers in cells
Nucl. Acids Res. 2003 31: 1470-1480; doi:10.1093/nar/gkg236 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Z. Sevilya, S. Loya, N. Adir, and A. Hizi

The ribonuclease H activity of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2 is modulated by residue 294 of the small subunit
Nucl. Acids Res. 2003 31: 1481-1487; doi:10.1093/nar/gkg235 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yoshiya Ikawa, Kentaro Tsuda, Shigeyoshi Matsumura, Shota Atsumi, and Tan Inoue

Putative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNP
Nucl. Acids Res. 2003 31: 1488-1496; doi:10.1093/nar/gkg225 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anastasia Nijnik, Richard Mott, Dominic P. Kwiatkowski, and Irina A. Udalova

Comparing the fine specificity of DNA binding by NF-B p50 and p52 using principal coordinates analysis
Nucl. Acids Res. 2003 31: 1497-1501; doi:10.1093/nar/gkg231 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Shawn A. Ritchie, Mohammed K. Pasha, Danielle J. P. Batten, Rajendra K. Sharma, Douglas J. H. Olson, Andrew R. S. Ross, and Keith Bonham

Identification of the SRC pyrimidine-binding protein (SPy) as hnRNP K: implications in the regulation of SRC1A transcription
Nucl. Acids Res. 2003 31: 1502-1513; doi:10.1093/nar/gkg246 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian Bailly, Gianni Chessari, Carolina Carrasco, Alexandra Joubert, John Mann, W. David Wilson, and Stephen Neidle

Sequence-specific minor groove binding by bis-benzimidazoles: water molecules in ligand recognition
Nucl. Acids Res. 2003 31: 1514-1524; doi:10.1093/nar/gkg237 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Giovanni Chillemi, Paola Fiorani, Piero Benedetti, and Alessandro Desideri

Protein concerted motions in the DNA–human topoisomerase I complex
Nucl. Acids Res. 2003 31: 1525-1535; doi:10.1093/nar/gkg242 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kristen Kruger Woods, Tao Lan, Larry W. McLaughlin, and Loren Dean Williams

The role of minor groove functional groups in DNA hydration
Nucl. Acids Res. 2003 31: 1536-1540; doi:10.1093/nar/gkg240 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Laura C. Bridgewater, Marlan D. Walker, Gwen C. Miller, Trevor A. Ellison, L. Daniel Holsinger, Jennifer L. Potter, Todd L. Jackson, Reuben K. Chen, Vicki L. Winkel, Zhaoping Zhang, Sandra McKinney, and Benoit de Crombrugghe

Adjacent DNA sequences modulate Sox9 transcriptional activation at paired Sox sites in three chondrocyte-specific enhancer elements
Nucl. Acids Res. 2003 31: 1541-1553; doi:10.1093/nar/gkg230 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A. Zeynep Özsoy, Heather M. Ragonese, and Steven W. Matson

Analysis of helicase activity and substrate specificity of Drosophila RECQ5
Nucl. Acids Res. 2003 31: 1554-1564; doi:10.1093/nar/gkg243 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shamol Saha, Aseem Z. Ansari, Kevin A. Jarrell, and Mark Ptashne

RNA sequences that work as transcriptional activating regions
Nucl. Acids Res. 2003 31: 1565-1570; doi:10.1093/nar/gkg227 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mónica Campillos, Miguel Angel García, Fernando Valdivieso, and Jesús Vázquez

Transcriptional activation by AP-2 is modulated by the oncogene DEK
Nucl. Acids Res. 2003 31: 1571-1575; doi:10.1093/nar/gkg247 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H. Cherif, J. L. Tarry, S. E. Ozanne, and C. N. Hales

Ageing and telomeres: a study into organ- and gender-specific telomere shortening
Nucl. Acids Res. 2003 31: 1576-1583; doi:10.1093/nar/gkg208 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Jean-Claude Nicod and Carlo R. Largiadèr

SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms
Nucl. Acids Res. 2003 31: e19; doi:10.1093/nar/gng019 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter A. C. ’t Hoen, Floor de Kort, G. J. B. van Ommen, and Johan T. den Dunnen

Fluorescent labelling of cRNA for microarray applications
Nucl. Acids Res. 2003 31: e20; doi:10.1093/nar/gng020 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patricia Leneuve, Sabine Colnot, Ghislaine Hamard, Fiona Francis, Michiko Niwa-Kawakita, Marco Giovannini, and Martin Holzenberger

Cre-mediated germline mosaicism: a new transgenic mouse for the selective removal of residual markers from tri-lox conditional alleles
Nucl. Acids Res. 2003 31: e21; doi:10.1093/nar/gng021 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julie K. A. Kasarjian, Masatake Iida, and Junichi Ryu

New restriction enzymes discovered from Escherichia coli clinical strains using a plasmid transformation method
Nucl. Acids Res. 2003 31: e22; doi:10.1093/nar/gng022 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tomoyuki Tanaka, Grace T. Y. Chung, Alan Forster, M. Natividad Lobato, and Terence H. Rabbitts

De novo production of diverse intracellular antibody libraries
Nucl. Acids Res. 2003 31: e23; doi:10.1093/nar/gng023 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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