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Previous Next 		Contents: Volume 36, Number 2, February 2008   [Index by Author] 

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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Chemistry Back

Caroline Bardin and Jean Louis Leroy
The formation pathway of tetramolecular G-quadruplexes
Nucleic Acids Research Advance Access published on November 27, 2007
Nucl. Acids Res. 2008 36: 477-488; doi:10.1093/nar/gkm1050 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Computational Biology Back

Marcos J. Araúzo-Bravo and Akinori Sarai
Indirect readout in drug-DNA recognition: role of sequence-dependent DNA conformation
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 376-386; doi:10.1093/nar/gkm892 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Chi N.I. Pang, Kuang Lin, Merridee A. Wouters, Jaap Heringa, and Richard A. George
Identifying foldable regions in protein sequence from the hydrophobic signal
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: 578-588; doi:10.1093/nar/gkm1070 [Abstract] [FREE Full Text] [Print PDF]  

Zhi John Lu and David H. Mathews
Efficient siRNA selection using hybridization thermodynamics
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2008 36: 640-647; doi:10.1093/nar/gkm920 [Abstract] [FREE Full Text] [Print PDF]  

Molecular Biology Back

Radek Sindelka, Jiri Jonák, Rebecca Hands, Stephen A. Bustin, and Mikael Kubista
Intracellular expression profiles measured by real-time PCR tomography in the Xenopus laevis oocyte
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 387-392; doi:10.1093/nar/gkm1024 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Michael E. Rodgers and Robert Schleif
DNA tape measurements of AraC
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 404-410; doi:10.1093/nar/gkm1030 [Abstract] [FREE Full Text] [Print PDF]  

Rut Valgardsdottir, Ilaria Chiodi, Manuela Giordano, Antonio Rossi, Silvia Bazzini, Claudia Ghigna, Silvano Riva, and Giuseppe Biamonti
Transcription of Satellite III non-coding RNAs is a general stress response in human cells
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 423-434; doi:10.1093/nar/gkm1056 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Michael Witcher, Filippa Pettersson, Daphne Dupéré-Richer, Alessandra Padovani, Leslie Summers-Deluca, Albert S. Baldwin, and Wilson H. Miller, Jr
Retinoic acid modulates chromatin to potentiate tumor necrosis factor alpha signaling on the DIF2 promoter
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 435-443; doi:10.1093/nar/gkm1058 [Abstract] [FREE Full Text] [Print PDF]  

Jane C. Hines and Dan S. Ray
Structure of discontinuities in kinetoplast DNA-associated minicircles during S phase in Crithidia fasciculata
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 444-450; doi:10.1093/nar/gkm1061 [Abstract] [FREE Full Text] [Print PDF]  

Melanie Amen, Herbert M. Espinoza, Carol Cox, Xiaowen Liang, Jianbo Wang, Todd M. E. Link, Richard G. Brennan, James F. Martin, and Brad A. Amendt
Chromatin-associated HMG-17 is a major regulator of homeodomain transcription factor activity modulated by Wnt/β-catenin signaling
Nucleic Acids Research Advance Access published on November 27, 2007
Nucl. Acids Res. 2008 36: 462-476; doi:10.1093/nar/gkm1047 [Abstract] [FREE Full Text] [Print PDF]  

Laura M. Pollard, Rebecka L. Bourn, and Sanjay I. Bidichandani
Repair of DNA double-strand breaks within the (GAA•TTC)n sequence results in frequent deletion of the triplet-repeat sequence
Nucleic Acids Research Advance Access published on November 27, 2007
Nucl. Acids Res. 2008 36: 489-500; doi:10.1093/nar/gkm1066 [Abstract] [FREE Full Text] [Print PDF]  

Mahmoud El-Shemerly, Daniel Hess, Aswin K. Pyakurel, Said Moselhy, and Stefano Ferrari
ATR-dependent pathways control hEXO1 stability in response to stalled forks
Nucleic Acids Research Advance Access published on November 29, 2007
Nucl. Acids Res. 2008 36: 511-519; doi:10.1093/nar/gkm1052 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Tony Nolan, Germano Cecere, Carmine Mancone, Tonino Alonzi, Marco Tripodi, Caterina Catalanotto, and Carlo Cogoni
The RNA-dependent RNA polymerase essential for post-transcriptional gene silencing in Neurospora crassa interacts with replication protein A
Nucleic Acids Research Advance Access published on November 29, 2007
Nucl. Acids Res. 2008 36: 532-538; doi:10.1093/nar/gkm1071 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Patrick Masson, Elisa Leimgruber, Sandrine Creton, and Martine A. Collart
The dual control of TFIIB recruitment by NC2 is gene specific
Nucleic Acids Research Advance Access published on November 29, 2007
Nucl. Acids Res. 2008 36: 539-549; doi:10.1093/nar/gkm1078 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

XinJing Tang, Jyothishmathi Swaminathan, Alan M. Gewirtz, and Ivan J. Dmochowski
Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: 559-569; doi:10.1093/nar/gkm1029 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Jacek R. Wisniewski, Alexandre Zougman, and Matthias Mann
N{varepsilon}-Formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: 570-577; doi:10.1093/nar/gkm1057 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Md. Emdadul Haque, Domenick Grasso, and Linda L. Spremulli
The interaction of mammalian mitochondrial translational initiation factor 3 with ribosomes: evolution of terminal extensions in IF3mt
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: 589-597; doi:10.1093/nar/gkm1072 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Martina Bauer, Larissa Marschaus, Muriel Reuff, Verena Besche, Simone Sartorius-Neef, and Felicitas Pfeifer
Overlapping activator sequences determined for two oppositely oriented promoters in halophilic Archaea
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: 598-606; doi:10.1093/nar/gkm1077 [Abstract] [FREE Full Text] [Print PDF]  

C. Hoischen, M. Bussiek, J. Langowski, and S. Diekmann
Escherichia coli low-copy-number plasmid R1 centromere parC forms a U-shaped complex with its binding protein ParR
Nucleic Acids Research Advance Access published on December 3, 2007
Nucl. Acids Res. 2008 36: 607-615; doi:10.1093/nar/gkm672 [Abstract] [FREE Full Text] [Print PDF]  

Alexander Kirilyuk, Genrich V. Tolstonog, Annette Damert, Ulrike Held, Silvia Hahn, Roswitha Löwer, Christian Buschmann, Axel V. Horn, Peter Traub, and Gerald G. Schumann
Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2008 36: 648-665; doi:10.1093/nar/gkm1045 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Nucleic Acid Enzymes Back

Sandra Holbein, Florian M. Freimoser, Thomas P. Werner, Agnieszka Wengi, and Bernhard Dichtl
Cordycepin-hypersensitive growth links elevated polyphosphate levels to inhibition of poly(A) polymerase in Saccharomyces cerevisiae
Nucleic Acids Research Advance Access published on November 22, 2007
Nucl. Acids Res. 2008 36: 353-363; doi:10.1093/nar/gkm990 [Abstract] [FREE Full Text] [Print PDF]  

Géraldine Farge, Teresa Holmlund, Julia Khvorostova, Reza Rofougaran, Anders Hofer, and Maria Falkenberg
The N-terminal domain of TWINKLE contributes to single-stranded DNA binding and DNA helicase activities
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 393-403; doi:10.1093/nar/gkm1025 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Shibani Dalal, Anna Chikova, Joachim Jaeger, and Joann B. Sweasy
The Leu22Pro tumor-associated variant of DNA polymerase beta is dRP lyase deficient
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 411-422; doi:10.1093/nar/gkm1053 [Abstract] [FREE Full Text] [Print PDF]  

Marie F. Soulière, Jean-Pierre Perreault, and Martin Bisaillon
Magnesium-binding studies reveal fundamental differences between closely related RNA triphosphatases
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2008 36: 451-461; doi:10.1093/nar/gkm1067 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Will E. Draper, Eric J. Hayden, and Niles Lehman
Mechanisms of covalent self-assembly of the Azoarcus ribozyme from four fragment oligonucleotides
Nucleic Acids Research Advance Access published on November 29, 2007
Nucl. Acids Res. 2008 36: 520-531; doi:10.1093/nar/gkm1055 [Abstract] [FREE Full Text] [Print PDF]  

Nicolas Leulliot, Markus T. Bohnsack, Marc Graille, David Tollervey, and Herman Van Tilbeurgh
The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases
Nucleic Acids Research Advance Access published on December 6, 2007
Nucl. Acids Res. 2008 36: 629-639; doi:10.1093/nar/gkm1074 [Abstract] [FREE Full Text] [Print PDF]  

Souad Naji, Michela G. Bertero, Patrizia Spitalny, Patrick Cramer, and Michael Thomm
Structure–function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2008 36: 676-687; doi:10.1093/nar/gkm1086 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Suzanne E. Hile and Kristin A. Eckert
DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences
Nucleic Acids Research Advance Access published on December 13, 2007
Nucl. Acids Res. 2008 36: 688-696; doi:10.1093/nar/gkm1089 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

RNA Back

Bijoy K. Mohanty and Sidney R. Kushner
Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli
Nucleic Acids Research Advance Access published on November 22, 2007
Nucl. Acids Res. 2008 36: 364-375; doi:10.1093/nar/gkm991 [Abstract] [FREE Full Text] [Print PDF]  

Jun Katahira, Takashi Miki, Keizo Takano, Mitsuji Maruhashi, Masanori Uchikawa, Taro Tachibana, and Yoshihiro Yoneda
Nuclear RNA export factor 7 is localized in processing bodies and neuronal RNA granules through interactions with shuttling hnRNPs
Nucleic Acids Research Advance Access published on December 5, 2007
Nucl. Acids Res. 2008 36: 616-628; doi:10.1093/nar/gkm556 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Stephanie Barth, Thorsten Pfuhl, Alfredo Mamiani, Claudia Ehses, Klaus Roemer, Elisabeth Kremmer, Christoph Jäker, Julia Höck, Gunter Meister, and Friedrich A. Grässer
Epstein–Barr virus-encoded microRNA miR-BART2 down-regulates the viral DNA polymerase BALF5
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2008 36: 666-675; doi:10.1093/nar/gkm1080 [Abstract] [FREE Full Text] [Print PDF]  

Steven A. Kawamoto, Christopher G. Sudhahar, Cynthia L. Hatfield, Jing Sun, Edward J. Behrman, and Venkat Gopalan
Studies on the mechanism of inhibition of bacterial ribonuclease P by aminoglycoside derivatives
Nucleic Acids Research Advance Access published on December 15, 2007
Nucl. Acids Res. 2008 36: 697-704; doi:10.1093/nar/gkm1088 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Structural Biology Back

Brian A. Todd and Donald C. Rau
Interplay of ion binding and attraction in DNA condensed by multivalent cations
Nucleic Acids Research Advance Access published on November 29, 2007
Nucl. Acids Res. 2008 36: 501-510; doi:10.1093/nar/gkm1038 [Abstract] [FREE Full Text] [Print PDF]  

Fabian Birzele, Gergely Csaba, and Ralf Zimmer
Alternative splicing and protein structure evolution
Nucleic Acids Research Advance Access published on November 30, 2007
Nucl. Acids Res. 2008 36: 550-558; doi:10.1093/nar/gkm1054 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Methods Online Back

Jesper Petersen, Lena Poulsen, Sarunas Petronis, Henrik Birgens, and Martin Dufva
Use of a multi-thermal washer for DNA microarrays simplifies probe design and gives robust genotyping assays
Nucleic Acids Research Advance Access published on December 6, 2007
Nucl. Acids Res. 2008 36: e10; doi:10.1093/nar/gkm1081 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Simon M. Lin, Pan Du, Wolfgang Huber, and Warren A. Kibbe
Model-based variance-stabilizing transformation for Illumina microarray data
Nucleic Acids Research Advance Access published on January 4, 2008
Nucl. Acids Res. 2008 36: e11; doi:10.1093/nar/gkm1075 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Teresia J. Buza, Fiona M. McCarthy, Nan Wang, Susan M. Bridges, and Shane C. Burgess
Gene Ontology annotation quality analysis in model eukaryotes
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: e12; doi:10.1093/nar/gkm1167 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

Christiaan Klijn, Henne Holstege, Jeroen de Ridder, Xiaoling Liu, Marcel Reinders, Jos Jonkers, and Lodewyk Wessels
Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: e13; doi:10.1093/nar/gkm1143 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.